BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23760.1

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329281 jgi|Araly1|329281|fgenesh1_pm.C_scaffold_7001508           322    2e-87


> Ahg329281 jgi|Araly1|329281|fgenesh1_pm.C_scaffold_7001508
Length=213

 Score =  322 bits (174),  Expect = 2e-87
 Identities = 201/214 (94%), Gaps = 2/214 (1%)
 Strand=Plus/Plus

Query  139  ATGGAGAAACAGAGTACTCAACCAATTTGCGGCCAAGAGGCTCTCCAACTTCTCAATTGC  198
            ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAAACAGAGTCCTCAACCAGTTTGCGGCCAAGAGGCTCTCCAACTTCTCAATTGC  60

Query  199  GTCGCGGAGTC-TCCTTTCGATCAAGAGAAATGCGTCCGATTTTTGCAATCTCTCAGAGA  257
            ||| ||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct  61   GTCACGGAGTCCTC-TTTCGATCAAGAGAAATGCCTCCGATTCTTGCAATCTCTCAGAGA  119

Query  258  ATGCGTTCTATCAAAGAAAGTAAAGAAGTTCTCGATACCGAGTCAAGATCACGACTCTGA  317
            ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct  120  ATGCGTTCTCTCAAAGAAAGTAAAGAAGTTCTCGATACCGAGTCAAGACCAAGACTCCGA  179

Query  318  GGGAGCAGCTTCAGCTACAAAGAGACCTTCATAA  351
            |||||||||||||||||| | |||||||||||||
Sbjct  180  GGGAGCAGCTTCAGCTACTACGAGACCTTCATAA  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19497505979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5