BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23770.1 Length=1066 Score E Sequences producing significant alignments: (Bits) Value Ahg329280 jgi|Araly1|329280|fgenesh1_pm.C_scaffold_7001507 396 2e-109 > Ahg329280 jgi|Araly1|329280|fgenesh1_pm.C_scaffold_7001507 Length=402 Score = 396 bits (214), Expect = 2e-109 Identities = 318/366 (87%), Gaps = 16/366 (4%) Strand=Plus/Plus Query 460 TGGACCAATTGGTGAACAAGTACAACAAATCGTGTGAAAATGTTTCATTTGCTGAACACA 519 ||||||||| || ||| || ||||||||||||| ||||||||||||||||||||||||| Sbjct 2 TGGACCAATCGGAGAAGAAATACAACAAATCGTCAGAAAATGTTTCATTTGCTGAACACA 61 Query 520 TGATTTTGAAAGACAAGTATGAGAGTCTGGTGATAGAGCATGAGAGCCTAATTAAAACGC 579 |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 62 AGATTTTGAAAGAGAAGTATGAGAGTCTGATGATAGAGCATGAGGGCCTAATTAAAACGC 121 Query 580 TCGAGTTGCTAGAGAAAACTCATGGATTCACTGTTGAAGATCTGGTGACTAAGCAAAAAG 639 | ||||| ||||||| |||||||||||||||||| || |||||||||| |||||||| || Sbjct 122 TTGAGTTTCTAGAGACAACTCATGGATTCACTGTAGATGATCTGGTGAATAAGCAAAGAG 181 Query 640 AAGCATTGGAGAAGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGGAGA 699 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 182 AAGCATTGGAGAGGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGCAGA 241 Query 700 AGAAGCTAAAGACTGTCGAAAGGAGTATCGAATACATAATGTCTGTTG-ATGTTCAAACC 758 |||||||| || |||||||| || |||||||||||||||||| | || ||| | ||||| Sbjct 242 AGAAGCTAGAGTTTGTCGAAAAGAATATCGAATACATAATGTC-GATGGATGATGAAACC 300 Query 759 G-G-TG--TGG-----ATTCAGAT---ATG-TCGACTAGTGAGGACGATGATGGAAACCG 805 | | || ||| |||||||| ||| | || |||||| |||||||| | ||||| Sbjct 301 GAGATGAATGGTGTGGATTCAGATGCGATGGT-GATTAGTGACGACGATGAAGAAAACCA 359 Query 806 AAGACA 811 |||||| Sbjct 360 AAGACA 365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39685956597 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5