BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23770.1

Length=1066
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329280 jgi|Araly1|329280|fgenesh1_pm.C_scaffold_7001507           396    2e-109


> Ahg329280 jgi|Araly1|329280|fgenesh1_pm.C_scaffold_7001507
Length=402

 Score =  396 bits (214),  Expect = 2e-109
 Identities = 318/366 (87%), Gaps = 16/366 (4%)
 Strand=Plus/Plus

Query  460  TGGACCAATTGGTGAACAAGTACAACAAATCGTGTGAAAATGTTTCATTTGCTGAACACA  519
            ||||||||| || ||| || |||||||||||||  |||||||||||||||||||||||||
Sbjct  2    TGGACCAATCGGAGAAGAAATACAACAAATCGTCAGAAAATGTTTCATTTGCTGAACACA  61

Query  520  TGATTTTGAAAGACAAGTATGAGAGTCTGGTGATAGAGCATGAGAGCCTAATTAAAACGC  579
             |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  62   AGATTTTGAAAGAGAAGTATGAGAGTCTGATGATAGAGCATGAGGGCCTAATTAAAACGC  121

Query  580  TCGAGTTGCTAGAGAAAACTCATGGATTCACTGTTGAAGATCTGGTGACTAAGCAAAAAG  639
            | ||||| ||||||| |||||||||||||||||| || |||||||||| |||||||| ||
Sbjct  122  TTGAGTTTCTAGAGACAACTCATGGATTCACTGTAGATGATCTGGTGAATAAGCAAAGAG  181

Query  640  AAGCATTGGAGAAGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGGAGA  699
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  182  AAGCATTGGAGAGGAAGGAAGTGATTGAAAAGTGGGAGAACAAGTTTGGTGAAATGCAGA  241

Query  700  AGAAGCTAAAGACTGTCGAAAGGAGTATCGAATACATAATGTCTGTTG-ATGTTCAAACC  758
            |||||||| ||  |||||||| || |||||||||||||||||| | || ||| | |||||
Sbjct  242  AGAAGCTAGAGTTTGTCGAAAAGAATATCGAATACATAATGTC-GATGGATGATGAAACC  300

Query  759  G-G-TG--TGG-----ATTCAGAT---ATG-TCGACTAGTGAGGACGATGATGGAAACCG  805
            | | ||  |||     ||||||||   ||| | || |||||| |||||||| | ||||| 
Sbjct  301  GAGATGAATGGTGTGGATTCAGATGCGATGGT-GATTAGTGACGACGATGAAGAAAACCA  359

Query  806  AAGACA  811
            ||||||
Sbjct  360  AAGACA  365



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39685956597


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5