BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23780.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg354394 jgi|Araly1|354394|fgenesh1_pg.C_scaffold_7001567           512    8e-145


> Ahg354394 jgi|Araly1|354394|fgenesh1_pg.C_scaffold_7001567
Length=519

 Score =  512 bits (277),  Expect = 8e-145
 Identities = 376/422 (89%), Gaps = 14/422 (3%)
 Strand=Plus/Plus

Query  1    ATGTCTAGTCTTGGGAACCAATCGGAGAAGAACAGCAATAACAAATTTTCCGATAATGTT  60
            ||||||||||||||| ||||||| | | || | | ||| |||||| ||||||||||||||
Sbjct  1    ATGTCTAGTCTTGGGGACCAATC-G-G-AG-A-A-CAACAACAAAATTTCCGATAATGTT  54

Query  61   CCAC-TAGCTCAACACGAGATTTGGAAAGAGAAATATGAGAGTTTGGTGACAGAGCACGA  119
            || | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  55   CC-CTTAGCTCAACACGAGATTTTGAAAGGGAAATATGAGAGTTTGGTGACAGAGCACGA  113

Query  120  GAATCTGGTGAAAGAACATGAAACCCTAATCAAAACACTCGAGCTTATAGAGAA---GCA  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct  114  GAATCTGGTGAAAGAACATGAAACCCTAATCAAAACACTCGAGCTTATAGAGAAAACGCA  173

Query  177  CGAAATCACATTAGAGGATTTAGTGAAGAAGAAGCAGCGAGAAGCATTGGTTGGGAAAGA  236
            | |||||||| |||||||| |||||||||||||| || ||||| ||||||||||||| ||
Sbjct  174  CCAAATCACAGTAGAGGATCTAGTGAAGAAGAAGGAGAGAGAATCATTGGTTGGGAAGGA  233

Query  237  AGAGATTGAAAAGTTTGACAAGGAGATTGGTGAAAGGAAGAAGATGCAAGAGATGCTTGA  296
            ||||||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||
Sbjct  234  AGAGATTGAAAAGTTTGACAACGAGATTGCTGAAATAAAGAAGATGCAAGAGATGCTTGA  293

Query  297  TAAGGATCTTGAATACTTAAAGTCTTGTGAAGAAACTGTGATGAATGGTATGAGTTCAGG  356
            ||||||| | ||||||||||||||| ||| |||||| | | |||| ||||||||||||||
Sbjct  294  TAAGGATATCGAATACTTAAAGTCTCGTGGAGAAACCGAGGTGAACGGTATGAGTTCAGG  353

Query  357  ACCAAGTGGTGCAAGAGTTGCAGACAA-A--CGTAATGTGAACAAGTTTGAATCACAAGA  413
            ||||||  ||||||||| |||||| || |  |||||| ||| |||||||| |||| ||||
Sbjct  354  ACCAAGCAGTGCAAGAGATGCAGAGAAGAAACGTAATCTGAGCAAGTTTGCATCAAAAGA  413

Query  414  GG  415
            ||
Sbjct  414  GG  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5