BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23790.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492489 jgi|Araly1|492489|fgenesh2_kg.7__1922__AT4G23790.1 2124 0.0
> Ahg492489 jgi|Araly1|492489|fgenesh2_kg.7__1922__AT4G23790.1
Length=1436
Score = 2124 bits (1150), Expect = 0.0
Identities = 1346/1441 (93%), Gaps = 12/1441 (1%)
Strand=Plus/Plus
Query 21 TCTTCTTGAGATGAAGTTGAAGTTGTCATCAATCTCCATGAATCATAAGAATGTGCTTCT 80
||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCTTCTTCAGATGAAGCTGAAGTTGTCATCAATCTCCATGAATCATAAAAATGTGCTTCT 60
Query 81 CATCAAGCTCATCTCCGCTATTCTGAT-ATCTTTTTTCGCGTTCCGTCTCTTCATTCTCC 139
||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||
Sbjct 61 CATCAAGCTCATCTCCGCTATTCTGATCA-CATTTTTCGCTTTCCGTCTCTTCATTCTCC 119
Query 140 ACTCCAGCGAGTTTTCTCCAATCTTTGCGTCGGTCACCGGAAAATTCGAAGCTCGGTTTC 199
|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 120 ACTCTAGCGAGTTTTCTCCAATCTTTGCGTCGGTTACTGGAAAATTCGAAGCTCGGTTTT 179
Query 200 TGCCGCCGGAGATTATCGTACCGGAAAATGAAGATCTGATTCCTCAAGATATTGAAGTAG 259
||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TGCCGCCGGAGGTTATTGTGCCGGAAAATGAAGATCTGATTCCTCAGGATATTGAAGTAG 239
Query 260 AGAAGTGTGATCTTTTCGCCGGAAAATGGATCCCAGATTCAGTAGGACCAATCTACACAA 319
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 AGAAGTGTGATCTTTTCGCCGGAAAATGGATCCCAGATTCAGTAGGACCAATTTACACAA 299
Query 320 ACAAATCATGCGGATCACTCATTGACGGTCACCAAAATTGTATCACCAATGGCCGGCCTG 379
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACAACTCATGCGGATCGCTCATTGACGGTCACCAAAATTGTATCACCAATGGCCGGCCTG 359
Query 380 ACTTAGATTTTCTCTACTGGAAATGGAAACCTCATGACTGTTTGTTACCACGTTTTGACC 439
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 ACTTAGATTTTCTCTACTGGAAATGGAAGCCTCATGACTGTTTGTTACCACGTTTTGACC 419
Query 440 CTAGAAGATTTCTTCAACTTATGAGGCATAAATCTTGGGCATTTATTGGTGACTCCATAT 499
|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 420 CTCGAAGATTTCTTCAACTTATGAGGAATAAATCTTGGGCATTGATTGGTGACTCCATAT 479
Query 500 CTCGTAACCACGTCGAATCACTGCTTTGTATGCTCTCTACGATTGAAGAACCGGTTGAAG 559
| |||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 480 CGCGTAACCACGTCGAGTCACTGCTTTGTATGCTCTCTACGGTTGAAGAACCTGTTGAAG 539
Query 560 TATACCATGACATGGAGTACAAATCAAAACGTTGGCATTTCCCTTTACATAACCTTACTG 619
||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 TATACCACGACAAGGAGTACAAATCGAAACGTTGGCATTTCCCTTTACATAACCTTACTA 599
Query 620 TATCCAACATATGGTCGCCATTTCTTGTTCAAGCCGCTATTTTCGAAGATTCTAACGGTG 679
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 TATCCAACATTTGGTCACCATTTCTTGTTCAAGCCGCTATTTTCGAAGATTCAAACGGTG 659
Query 680 TCTCGACCGCTTCTGTTCAGCTACATCTTGATAGACTCGATGAGACATGGACCAGTCTCA 739
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||| |
Sbjct 660 TCTCGACCGCTTCTGTTCAGCTACATCTGGATAAACTCGATGAGACATGGACCAATCTTA 719
Query 740 TGCCTAGCTTCGACTATGCGATCATCTCAACCGGTAAATGGTTTCTTAAATCCGCAATTT 799
|||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 720 TGCCTAGCCTCGACTATGCGATTATCTCAACAGGTAAATGGTTTCTTAAATCCGCGATTT 779
Query 800 ACCACGAAAATGCAAAACTCGTCGGTTGCCATAACTGTCAGGAAAAACCTCACATAGA-A 858
|||| ||||||| ||||| |||||||||||||||||| |||||||||||||||||| | |
Sbjct 780 ACCATGAAAATGGAAAACCCGTCGGTTGCCATAACTGCCAGGAAAAACCTCACATA-ATA 838
Query 859 GAGTTAGGATTCGACTATGCTTATAACGCATCGCTGCATAATGTCATGGACTTTCTAGCA 918
||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||||
Sbjct 839 GAGTTAGGATTTGACTATGCTTATAATGCATCGCTGCGGAATGTCATGGACTTCCTAGCT 898
Query 919 GCTGAAGATAACAGTAAAGGCACGGTTTTCTTTC-GGACTTCGACTCCCGATCATTTCCA 977
| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 899 GGGGAAGATAATAGTAAAGGCACGGTTTT-TTTCCGGACTTCGACTCCCGATCATTTCCA 957
Query 978 AAACGGGGAATGGCATAGTGGCGGGACGTGTAAGCAAACAGAGCCGGTGAGCGATGAGGA 1037
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 AAACGGGGAATGGCATAGCGGCGGGACATGTAAGCAAACAGAGCCGGTGAGCGATGAGGA 1017
Query 1038 GATTGAGATTAAGGATGTACATAAGATACTAAAAGATATTGAGATTGATCAGTTCAAGAG 1097
|||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 1018 GATTGAGATTAAGGATGTACATAAGATACTAAAAGACATTGAGATTGGTCAGTTTAAGAG 1077
Query 1098 GGCGGTTAGAGAGAAGACTAACCAGGACGGTGGGAATCTAAAGCTTTTGGATTTCACCCG 1157
||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |
Sbjct 1078 GGCGGTTAGAGAGAAGACTGGCCAGGATGGTGGAAATCTAAAGCTTTTGGATTTCACCGG 1137
Query 1158 GATGTTGCTGACCCGACCGGACGGTCATCCGGGTGAGTACCGACAGTTCAGGCCGTTTGA 1217
|||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||
Sbjct 1138 GATGTTGCTGACCCGACCTGATGGTCATCCGGGTGCGTACCGACAATTCAGGCCGTTTGA 1197
Query 1218 TAAAGACAAAAATGCAAAGGTACAGAACGATTGTTTGCATTGGTGCTTGCCTGGTCCGTT 1277
|||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||
Sbjct 1198 TAAAGACAAAAATGCAAAGGTACAAAACGACTGTCTGCATTGGTGTTTGCCTGGTCCGTT 1257
Query 1278 TGATTACTTGAATGATGTTATATTGGAGACTATAGTAAATGGCTGAGA--GGCAC-AC-A 1333
|||||||||||||||||||||||||||||| ||||||||||||||| | || || || |
Sbjct 1258 TGATTACTTGAATGATGTTATATTGGAGACCATAGTAAATGGCTGA-ACCGG-ACCACCA 1315
Query 1334 AAATGTGATTGGTACATGGCCAGTGGAAAACCGGTTCTATGGAAATAAATAGACTAATAC 1393
||||||||||||||||| |||| | ||||||||||||| |||| || |||| |||||||
Sbjct 1316 AAATGTGATTGGTACATCGCCAATCGAAAACCGGTTCTCTGGAGTTACATAGTCTAATAC 1375
Query 1394 TGAACAAATTTGTGTGAATTGGAAACATGTAAAATTATGTAAGAAAAATTGAGATAATGT 1453
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 GGCGCAAATTTGTGTGAATTGGAAACATGTAAAATTATGTAAGAAAATTTGAGATAATGT 1435
Query 1454 G 1454
|
Sbjct 1436 G 1436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5