BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23810.1
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492487 jgi|Araly1|492487|fgenesh2_kg.7__1920__AT4G23810.1 1568 0.0
> Ahg492487 jgi|Araly1|492487|fgenesh2_kg.7__1920__AT4G23810.1
Length=1447
Score = 1568 bits (849), Expect = 0.0
Identities = 1111/1233 (90%), Gaps = 36/1233 (3%)
Strand=Plus/Plus
Query 4 CCTATAACACTCTCATTCTCATCATATCATTCTTCAATCTATATAACCCATTCTTAATTA 63
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1 CCTATAACACTCTCATTCTCATCATATCATTCTTCAATCTATATAACTTATTCTTGATTA 60
Query 64 TACTCAACACACATTATATTTTTCTGATCATATCATTCTTTCAGTC-CATCTATATAACC 122
|| | ||||||||||| |||||||||||||||||| |||| || ||||||||||||
Sbjct 61 TA--C--CACACATTATA--TTTCTGATCATATCATTC-TTCAATCTTATCTATATAACC 113
Query 123 AATTCTTGATTTATA-C-TTAAAACACACATTAT-ACATC-TTTCT-CATCATAG-TTTG 176
|| || ||||||| | || | ||| ||| | ||| || | || | || |||
Sbjct 114 CGTTATTCATTTATATCTTTTTCA-ACATATTTTGGTATCATTGGTGAAT-A-AGATTTT 170
Query 177 TATCAA-TTTCCTAGAGTAAACTACCTAAAGGaa--aaaaaaaaTCTATTTTGGGAATCA 233
|| || ||| | ||| ||| | ||| || |||||| ||||||||||||||||
Sbjct 171 TAAAAAGTTT--TTGAG-AAA--A-AAAAAATAATTGAAAAAATTCTATTTTGGGAATCA 224
Query 234 -TATACTAAAAATGGAAGG-AAGAGATATGTTAAGTTGGGAGCAAAAGACATTGCTAAGC 291
|| ||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 225 TTA-ACTCAAAATGGAAGGTAA-AGATTTGTTAAGTTGGGAGCAAAAGACATTGCTAAGC 282
Query 292 GAGCTTATCAATGGATTTGATGCGGCCAAAAAGCTTCAGGCACGACTTAGAGAAGCTCCG 351
|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 283 GAGCTTATCAATGGATTTGAGGCGGCCAAAAAGCTTCAGGCACGAATCGGAGAAGCTCCG 342
Query 352 TCGCCGTCGTCATCATTTTCATCACCGGCGACGGCTGTTGCTGAGACTAACGAGATTCTG 411
||||| || |||||||||| ||| |||||||||||||| ||||||||||| |||||||||
Sbjct 343 TCGCCATCATCATCATTTTTATCTCCGGCGACGGCTGTGGCTGAGACTAATGAGATTCTG 402
Query 412 GTGAAGCAGATAGTTTCTTCCTACGAGAGATCTCTTCTTCTGCTAAACTGGTCATCCTCA 471
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 403 GTGAAACAGATAGTTTCTTCCTACGAGAGATCTCTTCTTCTACTAAACTGGTCATCCTCA 462
Query 472 CCGAGCGTACAACTTATTCCGACGCCGGTTACTGTAGTCCCGGTGGCAAATCCCGGCAGT 531
|||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 463 CCGACCGTACAACTTATTCCGACGCCGGCTACTGTAGTCCCGGTGGCGAATTCCGGCAGT 522
Query 532 GTTCCAGAATCTCCGGCATCGATAAACGGAAGTCCGAGAAGTGAAGAGTTTGCCGATGGA 591
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 523 GTTCCAGAATCTCCGGCATCGATTAACGGAAGTCCGAGGAGTGAAGAGTTTGCCGATGGA 582
Query 592 GGAGGTTCTAGCGAGAGTCATCATCGCCAAGATTACATTTTCAATTCAAAGAAAAGAAAG 651
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 583 GGAGGTTCTAGCGAGAGTCACCATCGCCAAGATTACATTTTCAATTCAAAGAAAAGGAAG 642
Query 652 ATGTTACCAAAGTGGTCAGAAAAAGTGAGAATAAGCCCAGAGAGAGGCTTAGAAGGACCT 711
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 643 ATGTTACCAAAATGGTCAGAAAAAGTGAGAATTAGCCCAGAGAGAGGCTTAGAAGGACCT 702
Query 712 CAAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACATTTTAGGCGCCAAATTC 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 CAAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACATTTTAGGCGCCAAATTC 762
Query 772 CCAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACTGTTGGGCAACGAAACAA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CCAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACTGTTGGGCAACGAAACAA 822
Query 832 GTCCAGAGATCAGACGGGGATGCTACGGTTTTCGAAGTGACGTACAGAGGAACACACACT 891
||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 823 GTCCAGAGATCGGACGGTGATGCAACGGTGTTCGAAGTTACGTACAGAGGAACACACACT 882
Query 892 TGTTCGCAGGCGATCACAAGAACACCACCATTAGCCTCGCCGGAGAAGC-G-AC-AAGAC 948
|||||||||||||||||| | | || ||| |||||||||||||||| | | ||||
Sbjct 883 TGTTCGCAGGCGATCACACCACCGCCTCCACCAGCCTCGCCGGAGAAGAAGCAAGAAGAG 942
Query 949 ACCAGAGTCAAACCAGCCATTACCCAAAAGCCAAAGGATATTCTCGAGAGTCTTAAATCC 1008
|||||||| | |||||| ||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 943 ACCAGAGTTAGACCAGCTATTTCCCAAAAGCCAAAGGATCTACTCGAGAGTCTTAAATCC 1002
Query 1009 AACTTAACCGTTCGAACCGATGGGCTTGATGATGGTAAAGACGTTTTCTCGTTCCCTGAT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1003 AACTTAACCGTTCGAACCGATGGGCTTGATGATGGTAAAGACGTTTTCTCGTTCCCTAAT 1062
Query 1069 ACGCCGCCGTTTTACAATTACGGAACTATCAACGGCGAGTTCGGCCACGTGGAGAGTTCT 1128
|||||||||||||||| |||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 1063 ACGCCGCCGTTTTACACTTACGGGACTACCAACGGCGACTTCGGCCATGTGGAGAGTTCT 1122
Query 1129 -C-C-GATCTTCGACGTTGTTGACTGGTTCAATCCAACGGTCGAGATTGACACAACTTTC 1185
| | |||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 1123 ACTCCGATCTTTGACGTTGTTGATTGGTTCAATCCAATGGTTGAGATTGACACAACTTTC 1182
Query 1186 CCCGCGTTTTTACACGAGTCGATTTATTATTAA 1218
||| |||||||| ||||||||||||||||||||
Sbjct 1183 CCCACGTTTTTAAACGAGTCGATTTATTATTAA 1215
Score = 394 bits (213), Expect = 1e-108
Identities = 226/232 (97%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 1263 ATCAGCGAGAGTTAAAACATAAAAGTACTTAGAGTAATCTAACGATGCATAATAAGGAAT 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1216 ATCAGCGAGAGTTAAAACATAAAAGTACTTAGAGTAATCTAACGATGCATAATAAGAAAT 1275
Query 1323 GTTCAACAGGACTTGAACATGATTTCAATACTAAGAGAG-ATTTATCTAGCTACTGGTAG 1381
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1276 GTTCAACAGGACTTGAACATGTTTTCAATACTAAGAGAGAATTTATCTAGCTACTGGTAG 1335
Query 1382 TAGCCGCAGACTTCTTGTTGTAAGCTTCCACTTCCTTTTTGTATGCTTCCATCAGTTTTG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TAGCCGCAGACTTCTTGTTGTAAGCTTCCACTTCCTTTTTGTATGCTTCCATCAGTTTTG 1395
Query 1442 CGGCCTTTCCGTTGTAAACTTGCTTCTCTTCTTCACTCAATTCCTGCAAAGA 1493
|||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1396 CGGCCTTTTTGTTGTAAACTTGTTTCTCTTCTTCACTCAATTCCTGCAAAGA 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56678284560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5