BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23820.1
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492486 jgi|Araly1|492486|fgenesh2_kg.7__1919__AT4G23820.1 2298 0.0
> Ahg492486 jgi|Araly1|492486|fgenesh2_kg.7__1919__AT4G23820.1
Length=1487
Score = 2298 bits (1244), Expect = 0.0
Identities = 1390/1462 (95%), Gaps = 4/1462 (0%)
Strand=Plus/Plus
Query 1 AGATTTTACTCTCATCCTAAATAAACCTCTCTTCATCGAAAATGTGGAGACTCTCTGTGT 60
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
Sbjct 1 AGATTTTACTCTCATCCTAAATAAACCTCTCTACAACGAAAATGTGGAGACTCTCTGTTT 60
Query 61 CAATTTTCCTCTTCTCATGTCTCTTCGTTTCTTCGTCTTCGTTGGGCGATTCGGAGGCGA 120
||||||||||||||||||| ||| ||||||||| || |||| |||||||||||||| |
Sbjct 61 CAATTTTCCTCTTCTCATGCCTCGCCGTTTCTTCTTCGTCGTACGGCGATTCGGAGGCTA 120
Query 121 CGTGTTCCGGTATAGTTCCGTTACGGTACCGGTACGATAAGATCTCGATAACCGACTTTG 180
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 121 CGTGTTCCGGTATAGTCCCGTTGCGGTACCGGTACGATAAGATCTCGATAACCGACTATG 180
Query 181 GAGGCGTTGGAGATGGTCGAACGGTGAATACTAAGGCGTTTAGGGCGGCGATTTATC-GG 239
| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| | ||
Sbjct 181 GCGGCGTTGGAGATGGTCGGACGGTGAATACGAAGGCGTTTAGAGCGGCGATTTA-CAGG 239
Query 240 ATTCAGCATCTGAAGAGGAGAGGAGGCACGCTTTTGTATATACCTCCGGGAGTGTATTTG 299
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 ATTCAGCATTTGAAGAGGAGAGGAGGCACGCTTTTGTATATACCACCGGGAGTGTATTTG 299
Query 300 ACGGAGAGCTTCAATCTCACTAGCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGGAGAGCTTCAATCTCACTAGCCATATGACTCTTTACTTAGCTAAAGGTGCTGTGATT 359
Query 360 AGAGCTGTTCAGGATACCTGGAATTGGCCATTGATTGATCCTTTGCCGTCTTATGGAAGA 419
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 360 AGAGCTGTTCAGGATACCTGGAACTGGCCATTGATAGATCCTTTGCCGTCTTATGGAAGA 419
Query 420 GGGAGAGAGTTACCAGGGGGACGGTATATGAGCTTTATTCATGGTGATGGGCTTCGTGAT 479
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 GGAAGAGAGTTACCAGGGGGACGGTATATGAGCTTTATTCATGGCGATGGGCTTCGTGAT 479
Query 480 GTAGTCATCACTGGACAAAATGGGACAATAGACGGTCAAGGAGAAGTGTGGTGGAACATG 539
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTAGTCATCACCGGACAAAACGGGACAATAGACGGTCAAGGAGAAGTGTGGTGGAACATG 539
Query 540 TGGCGTAGTAGAACGCTAAAGTACACAAGACCGAACTTAATCGAGTTCAAGGACTCTAAG 599
||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 540 TGGCGCAGTAGAACTCTAAAGTACACAAGACCAAACTTAATTGAGTTCAAGGACTCTAAG 599
Query 600 GAGATCATAATCTCCAATGTTATTTTCCAAAATTCACCTTTCTGGAACATTCATCCTGTG 659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 GAGATCATAATCTCCAATGTTATTTTCCAAAATTCACCCTTCTGGAACATTCATCCTGTG 659
Query 660 TATTGCAGCAACGTTGTCATCCATCACGTTACGATCTTAGCTCCACAAGATTCTCCCAAC 719
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TATTGCAGCAACGTTGTAATCCATCACGTTACCATCTTAGCTCCACAAGATTCTCCCAAC 719
Query 720 ACCGATGGAATCGATCCAGATTCCAGCTACAACGTCTGCATAGAAGACTCCTACATCTCA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 ACCGATGGAATCGATCCAGATTCCAGCTACAACGTCTGCATAGAAGACTCCTACATTTCA 779
Query 780 ACAGGAGACGACCTAGTGGCCATCAAAAGCGGTTGGGACCAGTACGGAATCGCCTATGGC 839
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 780 ACAGGAGACGACCTAGTGGCCATCAAAAGCGGTTGGGACGAGTATGGAATCGCCTATGGC 839
Query 840 CGTCCAAGCTCAAACATAACAATCCGCCGCATCACAGGATCTTCCCCGTTCGCAGGTATC 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGTCCAAGCTCAAACATAACCATCCGCCGCATCACAGGATCTTCCCCGTTCGCAGGTATC 899
Query 900 GCAATAGGAAGCGAAACATCAGGAGGAATCAAGAACATTATAGCAGAACATATCACTCTC 959
|||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 900 GCAATAGGAAGCGAAACATCAGGAGGAATCAAGAACATCGTAGCAGAACACATAACTCTC 959
Query 960 TCCAATATGGGAGTTGGAGTCAACATCAAGACAAACATTGGTCGTGGAGGATACATTAAA 1019
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 960 TCCAATATGGGAGTTGGAGTTAACATCAAAACAAACATTGGTCGTGGAGGATACATTAAA 1019
Query 1020 AACATCAAAATATCAGACGTCTATGTAGACACCGCAAAGTATGGGATCAAGATCGCCGGC 1079
||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1020 AACATCAAAATCTCAGACGTCTATATAGATACCGCAAAGTATGGGATCAAGATCGCCGGT 1079
Query 1080 GACACGGGAGATCATCCGGACGAGAATTATAACCCGAACGCTCTTCCAGTTGTTAAGGGA 1139
||||| |||||||| || |||||||||||||||||||||||||||||| | |||||||||
Sbjct 1080 GACACAGGAGATCACCCAGACGAGAATTATAACCCGAACGCTCTTCCAATCGTTAAGGGA 1139
Query 1140 ATACATATCAAGAACGTTTGGGGAGTTAACGTTCGAAACGCTGGCTCTATTCAAGGTCTT 1199
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1140 ATACATATCAAGAACGTTTGGGGAGTTAACGTTCGAAACGCAGGCTCTATTCAAGGCCTT 1199
Query 1200 AAGGGCTCACCATTTACGGGTATATGTTTGAGTGAGATTAATCTACATGGAAGCTTGAAT 1259
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1200 AAGGGCTCACCTTTTACAGGTATATGTTTGAGTGAGATAAATCTACATGGAAGCTTGAAT 1259
Query 1260 TCGTATAAGACGTGGAAGTGTTCGGATGTCAGTGGAACTTCACTAAAGGTTAGTCCTTGG 1319
||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||
Sbjct 1260 TCGTATAAGACGTGGAAGTGTTCGGATGTCATTGGAACTTCACTGAAGGTCAGTCCTTGG 1319
Query 1320 CCGTGTTCGGAGCTGAGAACTACCGGCGGGTCTAATTTGTGTTCTTCCACATTCTAAAAA 1379
||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||||
Sbjct 1320 CCGTGTTCGGAGCTGAGAACTACCGGCGGATCTTATTCGTGTTCTTCCACATTCTGAAAA 1379
Query 1380 CTTCTGAGCAAGTTCTTACCTCTTTGGTTCAAtttttttttGAAATAATTTATCTCCAGT 1439
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 CTTCTGAGCAAGTTTTTACCTCTTTGGTTCAATTTTTTAA--AAATAATTTATCTCCAGT 1437
Query 1440 TTGCAGTTCCTCCATTTATATA 1461
|||||||||||||||| |||||
Sbjct 1438 TTGCAGTTCCTCCATTAATATA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58239984605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5