BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23840.1
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492485 jgi|Araly1|492485|fgenesh2_kg.7__1918__AT4G23840.1 2667 0.0
> Ahg492485 jgi|Araly1|492485|fgenesh2_kg.7__1918__AT4G23840.1
Length=1863
Score = 2667 bits (1444), Expect = 0.0
Identities = 1736/1873 (93%), Gaps = 36/1873 (2%)
Strand=Plus/Plus
Query 27 GATTGGAGATGGAGAGTCCTTTGGTGCGTCTATGCTTAAAGGAAGCTTGTAAGAGCGGAG 86
||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||
Sbjct 19 GATTGGAGATGGAGAGTGCATTGGTGCGTCTATGCATAGAGGAAGCTTGTAAGAGCGGAG 78
Query 87 ATGCGGTGGAACGATGGCGACTTCAGCGGCGTAGTCTTGAGAGTCTGCCTCCTCACCTTG 146
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 79 ATGCGGTGGAACGATGGCGACTTCAGCGGCGGAGTCTTGAGAGGCTGCCTCCTCACCTTG 138
Query 147 CTGATGCTCTCCTCCGTCGCCTCCTCAAAAAGCGGCTTCTTTTCCCTTCGTTACTCGAAG 206
| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 139 CCGATGCTCTCCTCCGTCGCCTTCTCCACAAGCGGCTTCTTTTCCCTTCGTTACTCGAAG 198
Query 207 GATTCAAATATTCTGTAGAGAATATAGATCTCCGAGGCAAAAGCTCAGTTAACGCAGAAT 266
|||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 199 GATTTAAACATTCTGTAGAGAATATAGATCTCCGAGGCGAAAGCTCAATTAACGCTGAAT 258
Query 267 GGATGGCTTACATTGGAGGCTTCGTTAATCTAATTACTCTAAATCTTTCAGATTGCCAGA 326
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 259 GGATGGCTTACATTGGAGGCTTTGTTAATCTAATTTCTCTAAATCTTTCAGATTGCCAGA 318
Query 327 GAATCAACAGTTCCACCCTCTGGCCTATCACAGGATTAACAAGTTTGACAGAGTTGGACC 386
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 319 GAATCAACAGTTCCACCCTCTGGCCGATCACAGGATTAACAAGTTTGACAGAGTTGGATC 378
Query 387 TTTCAAGATG-TTTCAAGGTTACGGATGCTGGTATGAAGCACCTCCAATCTGTTGTAAAT 445
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 379 TTTCAAGATGCTTT-AAGGTTACGGATGCTGGTATAAAGCACCTCCAATCTGTTGTAAAT 437
Query 446 CTGAAAAAGTTGTGGATTTCACAGACAGGTGTCACTGAAGTTGGAATTTCTCTTCTTGCT 505
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 438 CTGAAAAAGTTGTGGATTTCACAGACAGGTGTTACTAAAGTTGGAATTTCTCTTCTTGCT 497
Query 506 TCACTTAAAAAATTGTCTCTTTTGGATTTGGGCGGCTTACCTGTAACTGATCAGAACTTG 565
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 498 TCACTTCAAAAGTTGTCTCTTTTGGATTTGGGCGGCTTACCTGTAACTGATCACAACTTG 557
Query 566 ATTTCTCTCCAGGCACTGACAAAGCTAGAGTACCTTGACATCTGGGGAAGCAACGTAACC 625
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 ATTGCTCTTCAGGCACTGACAAAGCTAGAGTACCTTGACATCTGGGGAAGCAACGTAACC 617
Query 626 AACCAAGGAGCTGTCAGTATTCTCAAATTTTCTAACTTGAGCTTCCTAAACCTCTCGTGG 685
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 618 AACCAAGGAGCTATCAGTATTCTCCAATTTTCAAACTTGAGCTTCCTAAACCTCTCGTGG 677
Query 686 ACAAGCATCACACAGACTCCAAACATTCCGCACCTTGAATGCTTACACATGAACACGTGC 745
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 678 ACAAGCGTCACACAGACTCCAAACATACCGCACCTTGAATGCTTACACATGAACATGTGC 737
Query 746 ACCATTGTCTCCGAACCAAAAACTCATAGCTCATTAGCTTCCTTGAAAAAGCTAGTTTTA 805
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 738 ACCATTGTCTCCGAACCAAAAACTCATTGCTCATTAGCTTCCTTGAAAAAGCTAGTTTTA 797
Query 806 TCGGGAGCTAATTTCAGTGCCGAGACAGAGTCCTTGTCCTTTACCAACAAAAGCTGTATA 865
||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||
Sbjct 798 TCGGGAGCTAATTTCAGTGCCGAAACAGAGGCCTTGTCCTTTACCAACAAAAGCTCTATA 857
Query 866 ACCTACTTAGACGTTTCCAAGACTTCCCTCAAAAACTTCAGCTTCTTAGAAACTATGTTT 925
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 858 ACCTACTTAGACGTTTCCAAGACTTCCCTCCAAAACTTCAGCTTCTTAGAAACTATGATT 917
Query 926 AACCTAGAACATCTTGATCTGAGCTCCACAGCTTTCGGGGATGATTCTGTTGGGTTTGTA 985
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 918 AACCTAGAACATCTTGATCTGAGCTCCACAGCTTTCGGCGATGATTCTGTTGGGTTTGTA 977
Query 986 GCATGTGTTGGTGAGAATCTAAAGAATCTTAATGTCTCGGATACACAAATCACTCCTTCT 1045
|||||||||||||||||||| | |||||||||||||||||||||| |||| ||| || ||
Sbjct 978 GCATGTGTTGGTGAGAATCTGAGGAATCTTAATGTCTCGGATACAAAAATTACTTCTGCT 1037
Query 1046 GGGGTCGGGAATCTTGCTGGACATGTGCCACAACTTGAGACATTATCTATGTCCCAGACA 1105
||||| ||||||||||| ||||||||||| ||||| |||||||| ||| |||| ||||||
Sbjct 1038 GGGGTTGGGAATCTTGCAGGACATGTGCCGCAACTCGAGACATTCTCTCTGTCTCAGACA 1097
Query 1106 TTTGTCGACGATCTTTCCATCTTGCTTATCAGCACCACGATGCCTTGCATTAAAGCCCTT 1165
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1098 TTTGTCGACGATCTTTCCATCTTGCTTATCAGCACCATGATGCCTTGCGTTAAAGCCCTT 1157
Query 1166 GACTTGGGCATGAACAGCACCCTAGGATTCTACTATCTAATATCTCCACAAGAAGAAAAA 1225
||||||||||| | | || | | |||| | | ||||| || |
Sbjct 1158 GACTTGGGCAT-----G-A-CC-A-G--------------TATC-CGAGAAGAACAAGCA 1193
Query 1226 GAGAAGTCACTAGCAGCACTACAATCTCTAACTTCCCTTGAAACCCTGAGTCTAGAACAT 1285
||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1194 GAGCCGTCGTTAGCAGCACTACAGTCTCTAACTTCCCTTAAAACCCTGAGTCTAGAACAT 1253
Query 1286 CCGTACCTGGGTGACAAAGCTCTTTCCGGTCTAAGTAGCCTTACTGGATTAACACATTTG 1345
||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1254 CCGTACCTGGGCGACACAGCTCTTTCCGCTCTAAGTAGCCTTACTGGATTAACACATTTG 1313
Query 1346 TCCCTAACAAGCACATCCCTCACAGATTCCACACTCCACCATCTCTCCTCTCTTCCAAAC 1405
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TCCCTAAGAAGCACATCCCTCACAGATTCCACACTCCACCATCTCTCCTCTCTTCCAAAC 1373
Query 1406 CTAGTCAGTCTCGGAGTCCGAGATGGAGTTTTGACCAGCAATGGTCTTGAGAAGTTTAGA 1465
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1374 CTAGTCAGTCTCGGAGTCCGAGATGCAGTTTTGACCAGCAATGGTCTCGAGAAGTTTAGG 1433
Query 1466 CCACCTAACAGGCTAAGAACACTCGACCTCCAAGGTTGTTGGCTTTTAACCAAAGATGAT 1525
|| ||||| ||||| |||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 1434 CCGCCTAAAAGGCTGAGAACACTAGACCTCAAAGGTTGTTGGCTTTTAACCAAGGATGAT 1493
Query 1526 ATTGCTGGTCTCTGCAAAAGGTACCCTCACATCAAGGTGAGGCATGAGCATG-CTGACTC 1584
|| |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 1494 ATCGCTGGTCTCTGCAAAAGGTACCCTCACATCAAAGTGAGGCATGAGCATGACA-ACTC 1552
Query 1585 TTCTTCTCTCGACCAGAATCAACTTCTTCCTCGGTCATCTACTCCACAGAGTTTTGGAAA 1644
||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||
Sbjct 1553 TTCTTCTCTCGACCAAAACCAACTTCTTCCTCGGTCATCCACGCCACAGAGTTTCGGAAA 1612
Query 1645 GGTAGCAAGGAGGA--A-CAACCAGAGGCCGGAGAGTTCTGTTGCTGTTCCCAGGAGTTT 1701
|||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 GGTACCTAGGAGGAGCAACAACCAGAGGCCGGAGAGTTCTGTTGCTGTTCCCAGGAGTTT 1672
Query 1702 TTTAGATCAGAGGGTGAAGTACAATAGGGAAGAGTTGGTTGCTCTACAAAATTCGCCTTT 1761
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1673 CTTAGATCAGAGGGTGAAGTATAATAGGGAAGAGTTGGTTGCTCTACAAAAGTCGCCTTT 1732
Query 1762 ATCACAATTGCTGCCATGGGAAGAACTTGTCAGTGTACCGGA-ACTTCTTGCTGATTCCG 1820
|||||||||||||||| |||||||||||||||||||||| || | |||| ||||||||||
Sbjct 1733 ATCACAATTGCTGCCACGGGAAGAACTTGTCAGTGTACCTGATA-TTCTAGCTGATTCCG 1791
Query 1821 TGATTTGAAGCAAA-TGGGGTGAACAAGTTGGATTTTAGTACCACCTGAA-TGAATTAGT 1878
|||||||||||||| ||| ||||||||| ||||||||| |||||||| ||||||||
Sbjct 1792 TGATTTGAAGCAAAATGGT-TGAACAAGTAATATTTTAGTAACACCTGAAATGAATTAGG 1850
Query 1879 AGAGATCTTAGCA 1891
|||||||||||||
Sbjct 1851 AGAGATCTTAGCA 1863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76751843675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5