BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23850.1
Length=2339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492484 jgi|Araly1|492484|fgenesh2_kg.7__1917__AT4G23850.1 3408 0.0
Ahg352166 jgi|Araly1|352166|fgenesh1_pg.C_scaffold_6002759 1687 0.0
Ahg474909 jgi|Araly1|474909|fgenesh2_kg.2__39__AT1G64400.1 675 0.0
> Ahg492484 jgi|Araly1|492484|fgenesh2_kg.7__1917__AT4G23850.1
Length=2215
Score = 3408 bits (1845), Expect = 0.0
Identities = 2035/2127 (96%), Gaps = 11/2127 (1%)
Strand=Plus/Plus
Query 54 agagagagagagagagaTCATGTCGCAGCAGAAGAAATACATCTTCCAAGTTGAAGAAGG 113
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||
Sbjct 21 AGAGAGAGAGAGATCGATCATGTCGCAGCAGAAGAAATTCATCTTCCAGGTTGAGGAAGG 80
Query 114 CAAAGAAGGTAGCGATGGAAGACCATCAGTTGGTCCAGTGTACCGGAGTATCTTTGCCAA 173
|||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 81 CAAAGAAGGTAGCGATGGAAGACCATCAGTCGGACCAGTGTACCGGAGTATCTACGCCAA 140
Query 174 GGACGGATTTCCCGACCCGATCGAAGGAATGGATAGTTGTTGGGATGTTTTCCGCATGTC 233
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 141 GGACGGATTTCCCGAGCCGATCGAAGGAATGGATAGTTGTTGGGATGTTTTCCGTATGTC 200
Query 234 TGTTGAGAAGTATCCAAACAATCCAATGCTGGGACGCCGCGAGATTGTAGATGGAAAGCC 293
||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 201 TGTTGAGAAATATCCAAACAATCCAATGCTGGGACGCCGTGAGATTGTAGACGGGAAGCC 260
Query 294 GGGTAAGTATGTCTGGCAAACATACCAAGAAGTCTACGACATTGTCATGAAACTTGGAAA 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 261 GGGTAAGTATGTCTGGCAAACATACCAAGAAGTCTACGACATTGTCATAAAACTTGGAAA 320
Query 354 TTCTCTCAGAAGTGTTGGAGTTAAGGACGAAGCAAAATGTGGTATCTATGGTGCAAATTC 413
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTCTCTCCGAAGTGTTGGAGTTAAGGACGAAGCAAAATGTGGTATCTATGGTGCAAATTC 380
Query 414 TCCTGAGTGGATTATCAGCATGGAGGCTTGTAATGCACATGGACTCTATTGTGTACCGTT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TCCTGAGTGGATTATCAGCATGGAGGCTTGTAATGCACATGGACTCTATTGTGTACCGTT 440
Query 474 ATATGATACACTAGGTGCT-GATGCTGTGGAATTCATCATTTCCCATTCAGAGGTTTCAA 532
||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 441 ATATGATACACTAGGTGCTAG-TGCTGTGGAATTCATTATTTCCCATTCAGAGGTTTCAA 499
Query 533 TTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGTTGTTCAAGACATGCCCAAACTCGACAG 592
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 500 TTGTTTTTGTGGAAGAGAAGAAGATCTCTGAGTTGTTTAAGACATGCCCAAACTCGACAG 559
Query 593 AGTACATGAAAACTGTTGTGAGCTTCGGGGGTGTCTCACGTGAACAAAAAGAAGAAGCTG 652
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 560 AGTACATGAAAACTGTTGTGAGCTTCGGTGGTGTCTCACGTGAACAAAAAGAAGAAGCTG 619
Query 653 AAACTTTTGGGTTGGTTATATATGCTTGGGATGAATTTTTGAAGCTGGGTGAAGGAAAGC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AAACTTTTGGGTTGGTTATATATGCTTGGGATGAATTTTTGAAGCTGGGTGAAGGAAAGC 679
Query 713 AATATGATCTCCCAATCAAAAAGAAAAGCGACATTTGCACGATTATGTATACGAGTGGAA 772
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 680 AATATGATCTCCCCATCAAAAAGAAAAGTGACATTTGCACGATTATGTATACGAGTGGAA 739
Query 773 CCACTGGTGACCCAAAGGGAGTGATGATATCTAACGAAAGCATTGTGACTCTAATCGCTG 832
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 740 CCACTGGTGACCCAAAGGGAGTGATGATATCTAACGAAAGCATTGTTACTCTAATCGCTG 799
Query 833 GAGTGATCCGTCTACTGAAAAGTGCTAACG-AGGCTCTGACTGTGAAAGATGTGTATCTT 891
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 800 GAGTGATCCGTCTACTGAAAAGTGCTAACGTAG-CTCTGACTGTGAAAGATGTGTTTCTT 858
Query 892 TCTTATCTTCCTCTTGCCCACATCTTTGACCGAGTTATCGAGGAGTGTTTCATTCAACAT 951
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 859 TCTTATCTTCCTCTTGCCCACATCTTTGACCGAGTGATCGAGGAGTGTTTCATTCAACAT 918
Query 952 GGTGCTGCAATTGGCTTCTGGCGAGGGGATGTAAAATTGTTGATCGAAGACCTTGCTGAG 1011
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 919 GGTGCTGCAATTGGCTTCTGGCGTGGGGATGTAAAATTGTTGATTGAAGACCTTGGTGAG 978
Query 1012 CTTAAACCAACTATTTTTTGTGCTGTACCTCGTGTCCTGGATAGAGTATACTCAGGTCTT 1071
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 979 CTTAAACCAACTATTTTTTGTGCTGTACCTCGTGTCCTCGATAGAGTATACTCAGGTCTT 1038
Query 1072 CAGAAGAAGCTTTCTGATGGTGGATTCTTAAAAAAGTTCATATTTGATTCTGCATTTTCC 1131
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1039 CAGAAGAAGCTTTCTGATGGTGGATTCTTAAAAAAGTTGTTGTTTGATTCTGCATTTTCC 1098
Query 1132 TATAAATTTGGTTATATGAAGAAGGGACAGTCTCATGTGGAGGCCTCTCCACTTTTTGAC 1191
||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 1099 TATAAATTTGGACATATGAAGAAGGGAAAGTCTCATGCGGAGGCCTCTCCACTTTGTGAC 1158
Query 1192 AAACTTGTGTTCAGCAAGGTTAAACAAGGACTCGGAGGCAATGTGAGGATTATTCTATCT 1251
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1159 AAACATGTATTCAGCAAGGTTAAACAAGGACTCGGAGGCAATGTAAGGATTATTCTATCT 1218
Query 1252 GGAGCTGCTCCTCTTGCTAGTCACGTAGAGTCATTTCTAAGAGTGGTGGCATGCTGTCAT 1311
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1219 GGAGCTGCTCCTCTTGCTAGCCACGTAGAGTCATTTCTTAGAGTGGTGGCATGCTGTCAT 1278
Query 1312 GTTCTCCAAGGATACGGTCTTACTGAAAGCTGTGCTGGAACTTTTGTCTCGCTGCCAGAT 1371
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GTTTTACAAGGATACGGTCTCACTGAAAGCTGTGCTGGAACTTTTGTCTCGCTGCCAGAC 1338
Query 1372 GAACTAGGT-ATGCTCGGCACAGTTGGTCCACCAGTGCCAAACGTTGATATACGCCTTGA 1430
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 GAACT-GGACATGCTCGGCACAGTTGGTCCACCAGTGCCAAACGTTGATATACGCCTTGA 1397
Query 1431 ATCCGTCCCCGAGATGGAATATGATGCTCTTGCGAGTACTGCACGTGGTGAAATCTGCAT 1490
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1398 ATCTGTCCCCGAGATGGAATATGATGCTCTTGCAAGTACTCCACGTGGTGAAATCTGCAT 1457
Query 1491 TCGGGGAAAGACCCTTTTCTCTGGTTACTACAAACGTGAAGATCTCACGAAAGAGGTTCT 1550
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1458 TCGGGGAAAGACCCTTTTCTCTGGTTACTACAAACGTGAAGACCTCACAAAAGAGGTTCT 1517
Query 1551 CATTGATGGATGGCTGCACACAGGTGATGTTGGTGAGTGGCAACCAGATGGAAGCATGAA 1610
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1518 CATTGATGGATGGCTGCACACAGGTGATGTTGGTGAGTGGCAACCAAATGGAAGCATGAA 1577
Query 1611 GATAATTGACAGGAAGAAGAATATCTTTAAACTCTCACAAGGAGAGTATGTTGCGGTGGA 1670
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1578 GATAATTGACAGGAAGAAGAATATCTTTAAACTGTCACAAGGAGAGTATGTTGCGGTCGA 1637
Query 1671 GAACATAGAAAACATATACGGTGAAGTACAAGCTGTTGATTCCGTGTGGGTGTACGGTAA 1730
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1638 GAACATAGAAAACATCTATGGTGAAGTACAAGCTGTTGATTCCGTGTGGGTGTACGGGAA 1697
Query 1731 CAGCTTTGAGTCCTTCCTAATAGCTATCGCCAACCCAAACCAGCATATCCTTGAACGCTG 1790
||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1698 CAGCTTTGAGTCCTTCCTAGTCGCTATCGCCAACCCAAACCAGCAAATCCTTGAACGCTG 1757
Query 1791 GGCTGCAGAAAACGGTGTGAGTGGTGACTATGACGCTCTCTGTCAAAATGAAAAGGCAAA 1850
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1758 GGCTGCAGAAAACGGTGTGAGCGGTGACTACAACGCTCTCTGTCAAAATGAAAAGGCAAA 1817
Query 1851 GGAATTCATTCTCGGAGAACTTGTTAAAATGGCCAAAGAGAAAAAGATGAAAGGGTTCGA 1910
||| ||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1818 GGATTTCATACTTGGAGAACTTGTTAAAATGGCCAAAGAGAAAAAGATGAAGGGGTTTGA 1877
Query 1911 GATCATCAAGGCGATTCATCTTGACCCAGTGCCATTTGACATGGAACGAGATCTTCTTAC 1970
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1878 GATCATCAAGGCGATTCATCTTGACCCAGTGCCGTTTGACATGGAACGCGATCTTCTTAC 1937
Query 1971 GCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCAGAGTGTGATCGACGA 2030
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1938 GCCGACCTTCAAAAAGAAAAGGCCTCAGTTACTGAAATACTACCAGAGTGTGATCGATGA 1997
Query 2031 AATGTACAAGACCATAAATGCAAAATTTGCTTCCAGAGGGTAGATTCCTCCTCACTCTCG 2090
|||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1998 AATGTACAAGACCACAAATGAAAAATTAGCTTCCAGAGGGTAGATTCCTCCTCACTCTCG 2057
Query 2091 GTC--CTT-GGGTCTCTCATTTTGCATGACGAAGACTTTGTTAATAGGCTCTTCTCTCAT 2147
|| ||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 2058 GTGGTCTTTGGGTCTC--ATTTTGCACGACGAAGACTTTGTTAATAGGCTCTTTTCTCAT 2115
Query 2148 CTGTGTACAATATTTGAATATTTCATA 2174
|||||||||||||||| ||||||||||
Sbjct 2116 CTGTGTACAATATTTGGATATTTCATA 2142
Score = 62.1 bits (33), Expect = 2e-08
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 2287 GAATGCTATCTAACTTTTCTTTTTAATAAAATTTTAAAA 2325
||||| |||| ||||||||||||||||||||||||||||
Sbjct 2177 GAATGTTATCAAACTTTTCTTTTTAATAAAATTTTAAAA 2215
> Ahg352166 jgi|Araly1|352166|fgenesh1_pg.C_scaffold_6002759
Length=2001
Score = 1687 bits (913), Expect = 0.0
Identities = 1611/1945 (83%), Gaps = 60/1945 (3%)
Strand=Plus/Plus
Query 126 CGATGG-AAGACCATCAGTTGGTCCAGTGTACCGGAGTATC-TTTGCCAAGGACGGATTT 183
|||||| || || || |||||||| ||||| || |||| | |||||||||||||| |||
Sbjct 54 CGATGGCAA-TCCCTCGGTTGGTCCTGTGTATCGTAGTA-CTTTTGCCAAGGACGG-TTT 110
Query 184 CCC-GACCCGATCGAAGGAATGGATAGTTGTTGGGATGTTTTCCGCATGTCTGTTGAGAA 242
||| | ||||| || ||||| | || ||||||||| ||||||||| | ||||||||||
Sbjct 111 CCCAAATCCGATTGATGGAATCCAAAGCTGTTGGGATATTTTCCGCACGGCTGTTGAGAA 170
Query 243 GTATCCAAACAATCCAATGC-TGGGACGCCGCGAGATTG-TAGATGGAAAGCCGGGTAAG 300
||||||||||||| ||||| ||| | |||| ||||||| || | || ||| | || |||
Sbjct 171 ATATCCAAACAATCGAATGCTTGGTA-GCCGTGAGATTGTTA-ACGGGAAGGCAGGAAAG 228
Query 301 TATGTCTGGCAAACATACCAAGAAGTCTACGACATTGTCATGAAACTTGGAAATTCTCTC 360
|| || ||| |||||||| ||||||| || ||||||||||| |||||||||||||||||
Sbjct 229 TACGTGTGGAAAACATACAAAGAAGTATATGACATTGTCATAAAACTTGGAAATTCTCT- 287
Query 361 A-GAAG-TGTTGGAGTTAAGGACGAAGCAAAATGTGGTATCTATGGTGCAAATTCTCCTG 418
| | || ||| ||| || |||| | || |||||||||||| |||||| ||| | | ||
Sbjct 288 ACGTAGTTGTGGGA-TTCAGGAGGGAGAAAAATGTGGTATTTATGGTATAAACTGTTGTG 346
Query 419 AGTGGATTATCAGCATGGAGGCTTGTAATGCACATGGACTCTATTGTGTACCGTTATATG 478
||||||| || ||||||||||| |||||||||||||| || |||||||| || ||||| |
Sbjct 347 AGTGGATCATTAGCATGGAGGCATGTAATGCACATGGCCTATATTGTGTCCCTTTATACG 406
Query 479 ATACACTAGGTGCTGATGCTGTGGAATTCATCATTTCCCATTCAGAGGTTTCAATTGTC- 537
||||| |||| |||| ||| ||||||||||||||||| ||| ||||||||||||||| |
Sbjct 407 ATACATTAGGCGCTGGTGCAGTGGAATTCATCATTTCTCATGCAGAGGTTTCAATTG-CT 465
Query 538 TTTGTGGAAGAGAAGAAGATCTCTGAG-TTGTTCAAGACATGCCCAAACTCGACAGAGTA 596
|||||||| |||||||||||| ||||| || || ||||| || |||||||| ||| | ||
Sbjct 466 TTTGTGGAGGAGAAGAAGATCCCTGAGCTT-TTTAAGACTTGTCCAAACTCAACAAAATA 524
Query 597 CATGAAAACTGTTGTGAGCTTCGGGGGTGTCTCACGTGAACAAAAAGAAGAAGCTGAAAC 656
||||| |||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct 525 TATGAAGACTGTTGTGAGCTTTGGCGGTGTCAAACCCGAACAAAAAGAAGAAGCTGAAA- 583
Query 657 TTTTGGG-TTGGTTATATATGCTTGGGATGAATTTTTGAAGCTGGGTGAAGGA-AAGCAA 714
||||| ||||| ||| || |||||||||| |||||||||||||||| |||| ||||||
Sbjct 584 AATTGGGATTGGTAATACATTCTTGGGATGAGTTTTTGAAGCTGGGTG-AGGATAAGCAA 642
Query 715 TATGATCTCCCAATCAAAAAGAAAAGCGACATTTGCACGATTATGTATACGAGTGGAACC 774
|||||||| || || |||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 643 TATGATCTTCCTATTAAAAAGCAAAGCGACATATGCACGATTATGTATACTAGTGGAACC 702
Query 775 ACTGGTGACCCAAAGGGAGTGATGATATCTAACGAAAGCATTGTGACTCTAATC-GCTGG 833
||||||||||| |||||||| |||| || || ||||||||||| ||| ||| | ||||
Sbjct 703 ACTGGTGACCCTAAGGGAGTTTTGATTTCAAATGAAAGCATTGTTACTATAA-CTACTGG 761
Query 834 AGTGATCCGTCTACT--GAAAAGTGCTAACG-AGGCTCTGA-CTGTGAAAGATGTGTATC 889
|||||| | | | || | || ||| || | | || || | | | ||| |||||||||
Sbjct 762 AGTGATGCATTTCCTAGGGAATGTG--AATGCAAGC-CT-ATCCGAGAAGGATGTGTATA 817
Query 890 TTTCTTATCTTCCTCTTGCCCACATCTTTGACCGAGTTATCGAGGAGTGT-TTCATTCAA 948
|||||||||| ||||| || || ||||||| || | ||||||||| ||| || ||||||
Sbjct 818 TTTCTTATCTCCCTCTCGCGCATGTCTTTGATCGGGCTATCGAGGAATGTATT-ATTCAA 876
Query 949 CAT-GGTGCTGCAATTGGCTTCTGGCGAGGGGATGTAAAATTGTTGATCGAAGACCTTGC 1007
| |||| | ||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 877 -GTAGGTGGTTCAATTGGTTTCTGGCGCGGGGATGTAAAATTGTTGATTGAAGACCTTGG 935
Query 1008 TGAGCTT-AAACCAACTATTTTTTGTGCTGTACCTCGTGTCCTGGATAGAGTATACTCAG 1066
|||| || ||||||||||||||||| || || || |||||||| ||| |||||||| |||
Sbjct 936 TGAG-TTAAAACCAACTATTTTTTGCGCCGTTCCCCGTGTCCTAGATCGAGTATACACAG 994
Query 1067 GTCTTCAGAAGAAGCTTTCTGATGGTGGATTCTTAAAAAAGTTCATATTTGAT-TCTGCA 1125
| || ||| |||| || |||| |||||| ||||| |||||| | |||||| | |||
Sbjct 995 GACTCCAGCAGAAACTATCTGTTGGTGGTTTCTTCAAAAAGAAGGTGTTTGATGT-TGCT 1053
Query 1126 TTTTCCTATAAATTTGGTTATATGAAGAAGGGACAGTCTCATGTGGAGGCCTCTCCACTT 1185
||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 1054 TTTTCCTATAAATTTGGAAATATGAAGAAGGGACAGTCTCATGTGGCGGCGGCTCCA-TT 1112
Query 1186 TT-TGACAAACTTGTGTTCAGCAAGGTTAAACAAGGACTCGGAGGCAATGTGAGGATTAT 1244
|| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1113 TTGTGACAAACATGTATTCAGCAAGGTTAAACAAGGACTTGGAGGCAATGTGAGGATTAT 1172
Query 1245 TCTATCTGGAGCTGCTCCTCTTGCTAGTCACGTAGAGTCATTTCTAAGAGTGGTGGCATG 1304
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1173 TCTATCTGGAGCGGCTCCTCTTGCTAGTCACATAGAGTCATTTCTAAGAGTTGTGGCATG 1232
Query 1305 CTGTCATGTTCTCCAAGGATACGGTCTTACTGAAAGCTGTGCTGGAACTTTTGTCT-CGC 1363
||| ||||||| |||||||| ||||| ||||| ||||||||||||||||||| | ||
Sbjct 1233 TTGTAATGTTCTACAAGGATATGGTCTAACTGAGAGCTGTGCTGGAACTTTTG-CAACGT 1291
Query 1364 TGCCAGATGAACTAGGTATGCTCGGCACAGTTGGTCCACCAGTGCCAAACGTTGATATAC 1423
| ||||| ||||||| ||||| || || ||||||||||| ||||||||||| |||||||
Sbjct 1292 TCCCAGACGAACTAGACATGCTTGGAACGGTTGGTCCACCCGTGCCAAACGTCGATATAC 1351
Query 1424 GCCTTGAATCCGTCCCCGAGATGGAAT-ATGATGCTCTTGCG-AGTACTGCACGTGGTGA 1481
|||||||||| ||||| || ||| ||| | |||||||||| | |||||| | ||||| ||
Sbjct 1352 GCCTTGAATCTGTCCCGGAAATG-AATTACGATGCTCTTG-GTAGTACTCCGCGTGGCGA 1409
Query 1482 AATCTGCATTCG-GGGAAAGACCCT-TTTCTCTGGTTACTACAAACGTGAAGATCTCACG 1539
|||||| || || |||||| || | ||| || || ||||||||||||||||| |||||
Sbjct 1410 AATCTGTATCCGTGGGAAA-ACTTTGTTT-TCAGGGTACTACAAACGTGAAGACCTCACA 1467
Query 1540 AAAGAGGTTCTCATTGATGGATGGCTGCACACAGGTGATGTTGGTGAGTGGCAACCAGAT 1599
||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||| ||
Sbjct 1468 AAAGAGGTTCTTATTGATGGATGGTTGCACACAGGTGATATTGGCGAGTGGCAACCAAAT 1527
Query 1600 GGAAGCATGAAGATAATTGACAGGAAGAAGAATATCTTTAAACTCTCACAAGGAGAGTAT 1659
||||||||||||||||||||| |||| ||||| ||||| |||||| | |||||||||||
Sbjct 1528 GGAAGCATGAAGATAATTGACCGGAAAAAGAACATCTTCAAACTCGCGCAAGGAGAGTAC 1587
Query 1660 GTTGCGGTGGAGAACATAGAAAACATATACGGTGAAGTACAAGCTGTTGATTCCGTGTGG 1719
|| || || ||||| ||||||| | ||| || ||||| ||| | |||| || | |||
Sbjct 1588 GTCGCTGTTGAGAATTTAGAAAATGTCTACAGTCAAGTAGAAGTTATTGAATCAATATGG 1647
Query 1720 GTGTACGGTAACAGCTTTGAGTCCTTCCTAATAGCTATCGCCAACCCAAACCAGCATA-T 1778
||||| || ||||||||||| |||||||| | || ||||| ||||| ||| || | |
Sbjct 1648 GTGTATGGAAACAGCTTTGAATCCTTCCTTGTCGCCATCGCTAACCCGGCCCAACAAACT 1707
Query 1779 CCTTGAACGCTGGGCTGCAGAAAACGGTGTGAGTGGTGACTATGA-CGCTCTCTGTCAAA 1837
| |||| || ||||| | || || || |||| ||| |||| | | | | ||||| ||||
Sbjct 1708 C-TTGAGCGATGGGCGGTGGAGAATGGAGTGAATGGAGACT-TCAACTCCCTCTGCCAAA 1765
Query 1838 ATGAAAAGGCAAAGGAATTCATTCTCGGAGAACTTGTTAAAATGGCCAAAGAGAAAAAGA 1897
| | ||||||||| | |||||| || || ||||| |||||||| |||||||||||||||
Sbjct 1766 ACGCAAAGGCAAAAGCATTCATACTTGGTGAACTCGTTAAAATAGCCAAAGAGAAAAAGT 1825
Query 1898 TGAAAGGGTTC-GAGATCATCAAGGCGATTCATCTTGACCCAGTGCCATTT-GACATGGA 1955
|||| ||||| |||||||| || || |||||||| || |||||| | ||| ||||||||
Sbjct 1826 TGAA-GGGTTTTGAGATCATAAAAGCTATTCATCTGGAACCAGTGGC-TTTCGACATGGA 1883
Query 1956 ACGAGATCTTCTTACGCCGACCTTCAAAAAGAAAAGGCCTCAGTTGCTGAAATACTACCA 2015
| |||| |||||||| || |||| ||||||||| |||||||| ||||| |||||||| ||
Sbjct 1884 AAGAGACCTTCTTACTCCAACCTACAAAAAGAAGAGGCCTCAATTGCTCAAATACTATCA 1943
Query 2016 GAGTGTGATCGACGAAATGTACAAG 2040
|| |||||| || ||||||||||||
Sbjct 1944 GAATGTGATAGATGAAATGTACAAG 1968
> Ahg474909 jgi|Araly1|474909|fgenesh2_kg.2__39__AT1G64400.1
Length=2272
Score = 675 bits (365), Expect = 0.0
Identities = 1458/1972 (74%), Gaps = 130/1972 (7%)
Strand=Plus/Plus
Query 130 GGAAGACCATCAGTTGGTCCAGTGTACCGGAGTATCTTTGC-CAAGGACGGATTTCCCGA 188
||||| ||||| || ||||| || ||||||||||||| || |||| ||| ||||| ||
Sbjct 136 GGAAGTCCATCGGTCGGTCCGGTTTACCGGAGTATCTACGCTAAAGG-CGGTTTTCCAGA 194
Query 189 CCCGATCGAAGGA-ATGGAT-AGTTG-TTGGGATGTTTTCCGCA-TGTCTGTTG-AGAAG 243
||| || | || | | | || || |||||| ||||||| | | |||| || ||||
Sbjct 195 ACCGGCCG-ATGATCTCG-TCAG-TGCATGGGATATTTTCCG-ATTATCTG-TGAAGAAA 249
Query 244 TATCCAAACAATCCAATGCTGGGACGCCGCGAGATTGTAGATGG-AAAGCCGGGTAAGTA 302
| |||| | ||||| ||||| || || | || || || ||||| ||||| ||| || ||
Sbjct 250 TCTCCAGATAATCCTATGCTTGGTCGTAGAGAAATAGTTGATGGAAAAGCTGGG-AAATA 308
Query 303 TGTCTGGCAAACATACCAAGAAGTCTACGACATTGTCATGAAACTTGGAAATTCTCTCAG 362
| | |||||||| ||| ||||||| || || | || || || |||||||| ||| ||||
Sbjct 309 TATATGGCAAACTTACAAAGAAGTATATGATGTAGTGATTAAGCTTGGAAACTCTATCAG 368
Query 363 AAGTGTTGGAGTTAAGG--ACGAAGCAAAATGTGGTATCTATGGTGCAAATTCTCCTGAG 420
|| | |||||||| || | | ||| ||||| ||||| ||||| || ||| ||||||
Sbjct 369 AACTATTGGAGTT--GGAAAAGGAGCGAAATGCGGTATTTATGGCGCCAATAGTCCTGAA 426
Query 421 TGGATTATCAGCATGGAGGCTTGTAATGCACATGGACTCTATTGTGTACCGTTATATGAT 480
|||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 427 TGGATTATAAGCATGGAGGCTTGCAATGCTCATGGACTCTACTGTGTACCTTTATATGAC 486
Query 481 ACACTAGGTGCT-GATGCTGTGGAATTCATCATTTCCCATTCAGAGGTTTCAATTGTCTT 539
|| ||||||||| || || | ||||||||||||| ||| |||| || ||| | | |||
Sbjct 487 ACTCTAGGTGCTGGA-GCAATAGAATTCATCATTTGTCATGCAGAAGTCTCACTCG-CTT 544
Query 540 TGT-GGAAGAGAAGAAGATCTCTGAGTTGTTCAAGACATGC-CCAAACTCGAC-AGAGTA 596
| | || ||||| || ||||||||||| || |||| || ||||| || || ||| ||
Sbjct 545 TCTCTGAGGAGAAAAAAATCTCTGAGTTATTGTTGACA-GCTCCAAAATCAACTAGA-TA 602
Query 597 CATGAA-AACTGTTGTGAGCTTCGG-G-GGTGTCTCACGTGAACAAAAAGAAGAAGCTGA 653
|||| || | |||||||||| || | ||| | || || |||| || |||||||||
Sbjct 603 TTTGAAGAA-TATTGTGAGCTTTGGTGAGGT-T-ACAAATGGTCAAAGAGCAGAAGCTGA 659
Query 654 AACTTTTGGGTTGGTTATATATGCTTGGGATGAATTTTTGAAGCTGGGTGAAGG-AAAGC 712
| ||| || |||||| | ||||| |||| |||||||| ||||| || ||| |
Sbjct 660 GAGGCATGGATTAACAATATATTCATGGGACCAATTCTTGAAGCTAGGTGAGGGTAAA-C 718
Query 713 AATATG-ATCTCCCAATCA-AAAAGAA-AAGCGACATTTGCACGATTATGTATACGAGTG 769
| |||| || | || | | || |||| ||||| |||||||| || |||||||| ||||
Sbjct 719 ATTATGAAT-TACC-A-GAGAAGAGAAGCAGCGATATTTGCACCATCATGTATACAAGTG 775
Query 770 GAACCACTGGTGA-CCCAAAGGGAGTGATG-ATATCTAACGAAAGCATTGTGAC-TCTAA 826
| || |||||||| || ||| ||||| || || | || || |||||| | | ||||
Sbjct 776 GCACAACTGGTGATCCTAAA-GGAGTCTTGCTTA-CAAATGAGAGCATTAT-CCATCTAC 832
Query 827 TCGCTGGAG-TGATCCGTCTACTGAAAAGTGCT-AACG-AG-GCTCTGA-CTGTGAAAGA 881
| | || | | | | | || ||| | | || | || | | | | | || |||||
Sbjct 833 TTGAAGGTGTTAAAAAAT-TGCTTAAATCT-ATAAATGAAGAG-T-TAACCAGT-AAAGA 887
Query 882 TGTGTATCTTTCTTATCTTCCTCTTGCCCACATCTTTGACCGAGTTATCGAGGAG-TGT- 939
||| ||||| || ||||| ||||| || || ||||| || || || || |||||| |||
Sbjct 888 TGTTTATCTCTCATATCTACCTCTGGCTCATATCTTCGATCGCGTGATTGAGGAGCTGTG 947
Query 940 T-TCAT-TCAA-CATGGTGCTGCAATTGGCTTCTGGCGAGGGGATG-TAAAATTGTTGAT 995
| | || | || || | || | || || |||||||||||||||| ||| | | |||||
Sbjct 948 TAT-ATCTGAAGCA--G-CCT-CTATCGGATTCTGGCGAGGGGATGTTAAGA-TATTGAT 1001
Query 996 CGAAGACCTTGCTGAGC-TT-AAACCAACTATTTTTTGTGCTGTACCTCGTGTCCTGGAT 1053
|||||| ||||| || || ||||| ||| |||| || ||||| ||||| || || ||
Sbjct 1002 AGAAGACATTGCT--GCATTGAAACCGACTGTTTTCTGCGCTGTTCCTCGCGTGCTAGAG 1059
Query 1054 AGAGTATACTCAGGTCTTCAGAAGAAGCTTTCTGATGGTGGATTCTTAAAAAAGTTCA-T 1112
||| | ||| | ||||||||| |||| |||||||||||||| ||| |||| ||| | |
Sbjct 1060 AGAATTTACACCGGTCTTCAGCAGAAACTTTCTGATGGTGGTTTCATAAAGAAG-AAATT 1118
Query 1113 ATTTGA-TTCTGCATTTTCCTATAAATTTGGTTATATGAAG-AAGGGACAGTCTCATGTG 1170
||| | || |||||| ||| ||| | | |||| | ||||| ||| ||||||
Sbjct 1119 ATTCAACTT-TGCATTCAACTACAAACATAAAAACATGACGAAAGGG-CAGCCTCATGAA 1176
Query 1171 GAGGCCTCTCCACTTTTTGACAAACTTGTGTTCAGCAAGGTTAAACAAGGACTCGGAGGC 1230
| || |||||| | ||||| | |||| || | ||||| ||| |||| | |||||
Sbjct 1177 CAAGCATCTCCAATGGCTGACAGAGTTGTATTTAAAAAGGTAAAAGAAGGGTTGGGAGGA 1236
Query 1231 AATGTGAGGATTATTCTATCTGGAGCTGCTCCTCTTGCTAG-TCACGTAGAGTCATTT-C 1288
|| ||| | | || || || ||||| ||||||||||| || |||| | || || ||| |
Sbjct 1237 AACGTGCGTCTGATCCTCTCAGGAGCAGCTCCTCTTGC-AGCTCACATCGAATC-TTTCC 1294
Query 1289 TAAGAGTGGTGGCATGCTG-TCATGTTCTCCAAGGATACGGTCTTACTGAAAGCTGTGCT 1347
| |||| || || || || ||||||| | |||||||||||||| || || || |||| |
Sbjct 1295 TTCGAGTTGTCGCGTG-TGCTCATGTTTTGCAAGGATACGGTCTAACAGAGAGTTGTGGT 1353
Query 1348 GGAACTTTTGTCTCGC-TGCCAGATGAACTAGGTATGCTCGGCACAGTTGGTCCACCAGT 1406
|| |||||||| || | | ||| |||| || | ||||| || || ||||||||||| ||
Sbjct 1354 GGCACTTTTGTGTC-CATTCCAAATGAGCTTGCAATGCTTGGAACGGTTGGTCCACCGGT 1412
Query 1407 GCCAAACGTTGATATACGCCTTGAATCCGTCCCCGAGATGGAATATGATGCTCTTGCGAG 1466
|| |||||||| ||| | || || || || || ||||||| ||||| |||||||| ||
Sbjct 1413 TCCTAACGTTGACATAAGGCTCGAGTCAGTTCCAGAGATGGGTTATGACGCTCTTGCAAG 1472
Query 1467 -TACTGCACGTGGTGAAATCTGCATTC-GGGGAAAGACCCTT-TTCTCTGGTTACTACAA 1523
|| ||||||| || || |||| || | ||||||| | || |||||||| || |||||
Sbjct 1473 CAAC-CCACGTGGAGAGATTTGCA-TCAGAGGAAAGA-CTTTGTTCTCTGGATATTACAA 1529
Query 1524 ACGTGAAGATCTCACGAAAGAGGTTCTCATTGATGGATGGCTGCACACAGGTGATGTTGG 1583
||||||||||||||| |||| || ||||||||||| ||||| || || |||||||||||
Sbjct 1530 ACGTGAAGATCTCACTCAAGAAGTCCTCATTGATGGTTGGCTTCATACTGGTGATGTTGG 1589
Query 1584 TGAGTGGCAACCAGATGGAAGC-ATGAAGATAATTGA-CAGGAAGAAGAATATCTTTAAA 1641
||||||||||||||||||| || ||||||||||| || | | |||||||| |||||||||
Sbjct 1590 TGAGTGGCAACCAGATGGA-GCCATGAAGATAATCGATC-GCAAGAAGAACATCTTTAAA 1647
Query 1642 CTCTCACAAGGAGAGTATGTTGCGGTGGAGAACATAGAAAACATATACGGTGAAGTACAA 1701
|| || |||||||| || |||||||| |||||| | || ||||||||| || | || |
Sbjct 1648 CTGTCTCAAGGAGAATACGTTGCGGTTGAGAACTTGGAGAACATATACAGTCATGT-CGC 1706
Query 1702 G-CTGTTGATTC-CGTGTGGGTGTACGGTAACAGCTTTGAGTCCTTCCTAA-TAGCTATC 1758
| | |||| || | | ||||| || || ||||||| |||||| || || | | ||| |
Sbjct 1707 GGCCATTGAATCGC-TATGGGTATATGGAAACAGCTATGAGTC-TTACTTAGTGGCTGTG 1764
Query 1759 GCCAAC-CCAAACCAGCATATCC--TTGAACGCTGGGCTGCAGAAAACGGTGTGAGTGGT 1815
| | |||| | || || || |||||| ||||| |||| || |||| ||
Sbjct 1765 GT-ATGTCCAAGCAAG-AT-TCAGATTGAACATTGGGCCAAAGAACACAGTGTTTCAGGA 1821
Query 1816 GACTATGACG-CTCTCTGTCAAAATGAAAAGGC-AAAGGAATTCATTCTCGGAGAACTTG 1873
|||| ||| | || |||||| ||| ||||| | |||| | || || || |||||| ||
Sbjct 1822 GACTTTGA-GTCTATCTGTCGAAACCAAAAGACTAAAG-AGTTTATCCTTGGAGAA-TTC 1878
Query 1874 TTAA-A-A-TGGCCAAAGAGAAAAAGATGAAAGGG-TTCGAGATCATCAAGGC-GATTCA 1928
|| | | | |||||||| |||||| |||| ||| || ||| | ||||| | | ||||
Sbjct 1879 --AACAGAGTAGCCAAAGACAAAAAGCTGAA-GGGATTTGAGCTGATCAAAGATG-TTCA 1934
Query 1929 TCTTG-ACCCAGTGCCATTTGACATGGAACGAGATCTTCTT-ACGCCGACCTT-CAAAAA 1985
| ||| || | || || || ||||||||| ||||||| | | || || | || ||| ||
Sbjct 1935 T-TTGGACACGGTACCGTTCGACATGGAAAGAGATCT-CATCACACCTTC-TTACAAGAA 1991
Query 1986 GAAAAGGCCTCAG-TTGCTGAAATACTACCAGAGTGTGATCGACGAAATGTA 2036
||||||||||||| || || || ||||| |||| | ||| || |||||||
Sbjct 1992 GAAAAGGCCTCAGCTT-CTCAAGTACTATCAGAAAGAGATTGATAAAATGTA 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88102736685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5