BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23860.1
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492483 jgi|Araly1|492483|fgenesh2_kg.7__1916__AT4G23860.3 2235 0.0
> Ahg492483 jgi|Araly1|492483|fgenesh2_kg.7__1916__AT4G23860.3
Length=1642
Score = 2235 bits (1210), Expect = 0.0
Identities = 1489/1620 (92%), Gaps = 34/1620 (2%)
Strand=Plus/Plus
Query 179 GTGAAGAATAATTGCGACAATGGCATCTGGTGTTTTCGAGGATGAAGCTGAAGGAACTAT 238
||| ||||| ||| || ||||||||| |||| |||||||||||| ||||| |||||| |
Sbjct 43 GTG-AGAAT--TTGTGAAAATGGCATCGGGTGATTTCGAGGATGATGCTGAGGGAACTGT 99
Query 239 AACGATCAATGAATATATCGAAAGGCTTGACGCAGAAGAGCTGGCAGCGGATTTGGTGTT 298
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 100 AACTATCAATGAATATATCGAAAGCCTTGACGCAGAAGAGCTGGCAGCGGATTTGGTGCT 159
Query 299 GGGTGGAGATGAAGGAGATGAGTGTACTTTCCCAAAGGGTTACATGAAAAGGCAAGCAAT 358
|||||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 160 GGGTGGAGATGAGGGAGATGAGTGTACTTACCCTAAGGGTTACATGAAAAGACAAGCAAT 219
Query 359 TTTCTCATGCATTACATGTACACCAGAGGGGAATGCTGGAATTTGCACTGCTTGTTGCTT 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 220 TTTCTCATGCATTACATGTACACCAGATGGGAATGCTGGAATTTGCACTGCTTGTTGTTT 279
Query 419 ATCTTGTCATGATGGCCATGAGCTTTTGGAGCTGTGGACTAAGAGAAATTTTCGATGTGA 478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 280 ATCTTGTCATGATGGCCATGAGCTCTTGGAGCTGTGGACTAAGAGAAATTTTCGATGTGA 339
Query 479 TTGCGGGAACTCAAAGTTTGGAACTTTGGCTTGTAAGCTTCTCCCGAGCAAAGATATAGA 538
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 340 CTGTGGGAACTCAAAGTTTGGAACTTTGGCGTGTAAGCTTCTCCCGAGCAAAGATGTAGA 399
Query 539 AAACTCTGAAAATTCTTACAACCATAATTTCAAAGGCTTGTACTGCACTTGCGACCGACC 598
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 400 AAACTCTGAGAATTCTTACAACCATAATTTCAAAGGCTTGTACTGCACTTGTGACCGACC 459
Query 599 TTACCCTGACCCAAATGTGGAAGAACAAGTAGAGATGATTCAGTGTTGTCTCTGTGAGGA 658
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 460 TTACCCTGACCCAAATGTGGAAGAGCAAGTGGAGATGATTCAGTGTTGTCTCTGTGAGGA 519
Query 659 TTGGTTTCATGAGGAGCATCTCGGTCTCACACCTTCAGACAGTGTTGGTAGCCAGATTCC 718
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||
Sbjct 520 TTGGTTTCATGAGGAGCATCTCGGTCTCAAACCTTCAGACTGTGTTGGTAGCCAGATCCC 579
Query 719 AAGGGATGAGGAAAGTGAGCCGATCTATGAAGATTTCATTTGTCAAAACTGCTCCCCAGC 778
|| |||||||||| | || ||||||||||| |||||||||||||||||||| |||||||
Sbjct 580 AAAGGATGAGGAAGGCGAACCGATCTATGAGGATTTCATTTGTCAAAACTGTTCCCCAGT 639
Query 779 ATGTTCGTTTCTGACACTTTATCCTGAGAACTTGTGGGTTGTTGCTAAAGTAGATTCCAC 838
|||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 640 TTGTTCGTTTCTGTCACTTTATCCTGAGAAATTGTGGGTTGTTGCTAAAGTAGAGTCCAC 699
Query 839 TGGTTCTGCTAATGCTTGTTCAGAGACAATTGAGT-TAGACAAAAACCACATGGATTCTG 897
||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 700 TGGTTCTGCTAATGCTTGTTCAGAGACAATTGAGTCAAG-CAAAACCCACATGGATTCTG 758
Query 898 AACCCGGCCAGCCAGAGAACGGTACTGATGCTGAGAAATCTGTTGTAGGAAAATGTTCTG 957
||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 759 AACCCTGCCAGCCAGAGAATGGTTCTGATGCTGAGAAAGCTGTTGTAGGAAAATGTTCTG 818
Query 958 AGACGATCAG-TGACTCAGAACCTGGCCAGCCTGAGAACGGCACTGAAGCCGAGAAATCT 1016
||| |||| | |||||| ||||| ||||||||||||||| | ||||||||||||||||||
Sbjct 819 AGAAGATC-GATGACTCTGAACCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAATCT 877
Query 1017 GTTGTGCAAAAATGTTCTGAGAAGATCGATGAATCTGAAGCCGGCCAGCCTGAGAACAGT 1076
||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 878 GTTGTGCGGAAATGTTCTGAGAAGATTGATGACTCTGAACCCGGCCAGCCTGAGAACAGT 937
Query 1077 ACTGAAGCCGAGAAATTCGTTGTGCGGAAATGTTCTGAGAAGATCGATGGCTC---TGAA 1133
|||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| || |
Sbjct 938 ACTGAAGCCGAGAATTTCGTTGTGCGAAAATGTTCTGAGAAGATAGATGACTCTGGTGGA 997
Query 1134 AATGTTCCTGCAGCTGGTTGTGTTATTAGGACTGATCTAAACTCGTGTCCTGAGTTTGAG 1193
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 998 CCCGTTCCTGCAACTGGTTGCGTTATTAGGACTGATCTAAACTCGTGTCCTGAGTTTGAG 1057
Query 1194 AAGAAACCTTTGTTTTTGACCAAAAACTGGAGGAACATCCTATGCAGATGCGAAAAGTGC 1253
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1058 AAGAAACCTTTGTTTTTGACCAAAAACTGGAGGAACATCCTATGCAAATGTGAAAAGTGC 1117
Query 1254 CTTGAGATGTATAAGCAGAGAAAGGTAAGCTATCTACTTGATGCAGAGGACACAATTGTT 1313
||||||||||||||||||||| |||||||||||||||||| | ||||||||| ||||||
Sbjct 1118 CTTGAGATGTATAAGCAGAGAGGGGTAAGCTATCTACTTGACGTAGAGGACACGATTGTT 1177
Query 1314 GAATACGAGAAGAAGGCGAAGGAAAAAAGAACAGAGAAACTGGAGAAACAAGAAGGTGAA 1373
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1178 GAATACGAGAAGAAGGCGAAGGAGAAAAGAACAGAGAAACTGGAGAAACAAGAAGGTGAA 1237
Query 1374 GCACTTGATCTTCTGAATAATCTAGACCACGTATCCAAAGTTGAGCTCCTTCACGGAATC 1433
|||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1238 GCACTTGATCTTCTAAATAATCTCGACCACGTATCCAAAGTTGAGCTTCTTCACGGTATC 1297
Query 1434 AAAGACTTCCAAGACGGACTCCAGGGTTTAATGGAGTCTGCTGGGCCATCAAAGGCGATA 1493
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1298 AAAGACTTCCAAGACGAACTCCAGGGTTTAATGGAGTCTGCTGGGCCGTCAAAGGCAATA 1357
Query 1494 ACTTCTGCAGATATCGAGCAAATGTTTTCAAAACTGAAAAACAAACGTAAAAGGATGGAG 1553
|| ||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1358 ACAGCTGAAGATATCGAGCAAATGTTTTCGAAACTGAAGAACAAACGCAAAAGGATGGAG 1417
Query 1554 TGAGAGGAGTTAT-A-----AAGGTAGTAAGTCTTTCT-TTCGACATTTCATGTTAACtt 1606
||||||||||||| | |||||||||| ||||||| || | ||| ||||||||||||
Sbjct 1418 TGAGAGGAGTTATGAGTTTTAAGGTAGTAAATCTTTCTCTTGG-CATCTCATGTTAACTT 1476
Query 1607 tttttAGATATATGTTGTTTCGTTGGTTTGAAATGAAGAATGAGGAGGTTTCTTTCCTCT 1666
| ||||||||| ||||||||||||||||||||||| | |||| ||||| | | |
Sbjct 1477 TATTTAGATAT--GTTGTTTCGTTGGTTTGAAATGA-G---GAGG---TTTCT--CGT-T 1524
Query 1667 TCCTCTGCTCTTGTCTGTCTTTAGTTTCCTAAGTAATGC-AACCAACTTTTTACTTTAGT 1725
||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||| |||
Sbjct 1525 -CCTCTGCTCTTATCTGTCTTTAGTTTCCTAAGTTATGCGAAC-AACTTTTTACTTCAGT 1582
Query 1726 GCATGAAGTTTGTAGCTTATGAAACAGTCGACTACT-ATATATAATAAGCTACTAGTTCT 1784
| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 1583 GTATGAAGTTTGTAGCTTATGAAACAGTTGACTATTTATATATAATAAGCTACTAGTTCT 1642
Score = 195 bits (105), Expect = 1e-48
Identities = 144/162 (89%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 975 GAA-CCTGGCCAGCCTGAGAACGGCACTGAAGCCGAGAAATCTGTTGT-GCAAAAATGTT 1032
||| ||| ||||||| ||||| || |||| || |||||| ||||||| | ||||||||
Sbjct 758 GAACCCT-GCCAGCCAGAGAATGGTTCTGATGCTGAGAAAGCTGTTGTAG-GAAAATGTT 815
Query 1033 CTGAGAAGATCGATGAATCTGAAGCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAAT 1092
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 816 CTGAGAAGATCGATGACTCTGAACCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAAT 875
Query 1093 -TCGTTGTGCGGAAATGTTCTGAGAAGATCGATGGCTCTGAA 1133
| |||||||||||||||||||||||||| |||| |||||||
Sbjct 876 CT-GTTGTGCGGAAATGTTCTGAGAAGATTGATGACTCTGAA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67191192180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5