BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23870.1

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492480 jgi|Araly1|492480|fgenesh2_kg.7__1913__AT4G23870.1         736    0.0  


> Ahg492480 jgi|Araly1|492480|fgenesh2_kg.7__1913__AT4G23870.1
Length=600

 Score =  736 bits (398),  Expect = 0.0
 Identities = 470/504 (93%), Gaps = 7/504 (1%)
 Strand=Plus/Plus

Query  176  AAAAATGGGAAACTGTTTGATGGGAGGAAACAACGTTG-agaaaatggttaaagaagaag  234
            |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
Sbjct  1    AAAAATGGGAAACTGTTTGATGGGAGGAAACAACGTTGCA-AAAATGGTTCAAGAAGACG  59

Query  235  aagtaatgaagaaagaatacaagagaaaagatcgtaaagtaaagatagttttgagaagag  294
            | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  60   AGGTAATGAAGAAAGATTACAAGAGAAAAGATCGTAAAGTAAAGATTGTTTTGAGAAGAG  119

Query  295  aTGAGTTAGAGAAACTCATTCTTTTTCAGCTAAATGCCAATGGTAACGTCGACGGCAAGG  354
            |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct  120  ATGAGTTAGAGAAACTCATTCTTTTTCAGCTAAATGCCAACGGCAACGTTGACGGCAAAG  179

Query  355  GAGAAACAACTTTGGCTTCTTTTGGTGACTTTCTAAGGGAGTTAGAGGCGGAGAGATCTG  414
            |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct  180  GAGAGACAACTTTGGCTTCTTTTGGCGACTTTCTCAGGGAGTTAGAGGCGGAGAGATCTG  239

Query  415  CGGGAGAAGCGGCTGCAAAGGCGGCTGAGGAAGAGGAGGAGTCTCGTCGGAGATGTCGTA  474
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CAGGAGAAGCGGCTGCAAAGGCGGCTGAGGAAGAGGAGGAGTCTCGTCGGAGATGTCGTA  299

Query  475  AGTGGAGGCCCTCGTTGGAAAGAATCACTGAATGGCCTGAAGAAACActttcgtaatctt  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  300  AGTGGAGGCCCTCGTTGGAAAGAATCACTGAATGGCCTGAAGAAACACTTTCGTAATCAC  359

Query  535  tttctttaatcctttctttttcgtttt-agagatcttgaag-tcttttatttttcttatg  592
            ||||||||||||||| |||||  |||| |   |   | ||| | ||||||||||||||| 
Sbjct  360  TTTCTTTAATCCTTTTTTTTTTTTTTTCATTTAAGAT-AAGGT-TTTTATTTTTCTTATT  417

Query  593  aaaatgggattttttgtgggggagtttgcccttttgctgattttttt-ccctttttttac  651
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  418  AAAATGGGATTTTTTGTGGGGGAGTTTGCTCTTTTGCTGATTTTTTTTCCCTTTTTTTAC  477

Query  652  cgagggatattttttCATCTGAGA  675
            ||||||||||||||||| ||||||
Sbjct  478  CGAGGGATATTTTTTCACCTGAGA  501


 Score =  145 bits (78),  Expect = 6e-34
 Identities = 94/101 (93%), Gaps = 4/101 (4%)
 Strand=Plus/Plus

Query  703  AAAAGGCTTATTTACCCCAGAGAAAATCCTCAGAAAAAACGAAATTATGTA--TTCATTT  760
            |||||||||||||||||||||||||||||  ||||||||||||||||||||  || ||||
Sbjct  501  AAAAGGCTTATTTACCCCAGAGAAAATCCAAAGAAAAAACGAAATTATGTATTTTTATTT  560

Query  761  TCGTCTTTCATGTAAGGTTCAATTTGTC-ATCATAAATAAA  800
            |||||||||||||||||||||||||||| | ||||||||||
Sbjct  561  TCGTCTTTCATGTAAGGTTCAATTTGTCGA-CATAAATAAA  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30307719015


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5