BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23880.1
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492479 jgi|Araly1|492479|fgenesh2_kg.7__1912__AT4G23880.1 1088 0.0
> Ahg492479 jgi|Araly1|492479|fgenesh2_kg.7__1912__AT4G23880.1
Length=767
Score = 1088 bits (589), Expect = 0.0
Identities = 717/777 (92%), Gaps = 16/777 (2%)
Strand=Plus/Plus
Query 1 CTTTCAAGATAACACAAAACCTTTCTCTCCCT-ATTTGTTGAAGAAGAAGaaaaaaaaaG 59
|||||||||||||||||||||| ||||||||| ||||||| | |||||| || || |||
Sbjct 1 CTTTCAAGATAACACAAAACCTCTCTCTCCCTAATTTGTT--A-AAGAAG-AAGAAGAAG 56
Query 60 AAAATGATGGATTCTCTAGCTAAATGCTTCAACAGGCTTCAAGAAAGGTACGACAACGTT 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ATGATGATGGATTCTCTAGCTAAATGCTTCAACAGGCTTCAAGAAAGGTACGACAACGTT 116
Query 120 CTAGAAGCAAAACCTATCTACAGAGACGACTTAGACATAACGTTGCCTCTGAACGAATCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CTAGAAGCAAAACCTATCTACAGAGACGACTTAGACATAACGTTGCCTCTGAACGAATCA 176
Query 180 AAGGAGGTTTCAGTAGAATCGACCAAAAAGTCTCGGTGCTTGCAGAGAGCCAAGAGGATT 239
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 177 --G-AGGTTTCAGTAGAATCGACCAAAAGGTCTCGGTGCTTGCAGAGAGCCAAGAGGATT 233
Query 240 GACAAATCGCTGAGGTTTGAAGAAGGCGAAGAGGAAGAAGATGAACAGAATAAAAAGCCT 299
||||||||||||||||| |||| || |||||||||| ||||||||||| ||||||||
Sbjct 234 GACAAATCGCTGAGGTTCGAAGC-GG--AAGAGGAAGACGATGAACAGAAGCAAAAGCCT 290
Query 300 CTGGCTAAGCCACGTAAGGTTGTGAGGTTTCAGTTAGAGAATAATAAGATCTTCGAGCCA 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CTAGCTAAGCCACGTAAGGTTGTGAGGTTTCAGTTAGAGAATAATAAGATCTTCGAGCCA 350
Query 360 AAGAAGACGGTGAGTTTTGATGATGATCACGAACTCAAACCAAAGGAGAATCCTCTGGAA 419
|||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||
Sbjct 351 AAGAAGACGGTGAGTTTTAATGATGATCACGAACTCGAACTAAAGGAGAAGCCTCTGGAA 410
Query 420 GAAAAAGAGAGTTTGAAAATGGTTGAAGGGAAGGAAGAGGTCGTGAGGGTTAAGATCAAG 479
|| |||||| ||||||| || |||||| |||||||||||| || |||||||||||||||
Sbjct 411 GAGAAAGAGGGTTTGAATATAGTTGAAAAGAAGGAAGAGGTTGTCAGGGTTAAGATCAAG 470
Query 480 ATGACAAAGCATGAAGCTCAACGGTTGTTGTCGAAATGCAAAAACGACAGCGTTTTAAAG 539
||||||||||| ||||||||| || |||| |||||||||||||||||||||||||| |
Sbjct 471 ATGACAAAGCAAGAAGCTCAAAGGCTGTTATCGAAATGCAAAAACGACAGCGTTTTTGAT 530
Query 540 TTGGAGCATCTTATGGACCAGATCGCACACGTCCCTGTTCATCAGCTTCAAGTCGCTATG 599
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGGAGCATTTTGTGGACCAGATCGCACACGTCCCTGTTCATCAGCTTCAAGTCGCTATG 590
Query 600 GTGATGGTTGGTTGTAATAATGAGCGACAAGGAAATGGCTGCTGGTTATCCCAGCTGGAA 659
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 591 GTGATGGTTGGTTGTAATAATGAGCGACAAGGAAATGGCTGCTGGTTCTCCCAGCTGGAA 650
Query 660 TAAGTTAATCTTGAGTTTTTCTATCAAA-TTTT--GTAGTTTTAGAGTAGAAACTATATA 716
||||||||| |||||||| |||||| || |||| |||||||||| |||| | |||||||
Sbjct 651 TAAGTTAATTTTGAGTTTATCTATCGAACTTTTTTGTAGTTTTAGGGTAGTATCTATATA 710
Query 717 AAT-T-TACGTTTGTATATATATTTTGTAACAGATTAATAGAAGTAACATGATTTTG 771
||| | || || ||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 711 AATATATATGTGTGTGTATATATTTTGTAACAGATTAATAGAAGTAACATGAATTTG 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28554064833
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5