BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23882.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492478 jgi|Araly1|492478|fgenesh2_kg.7__1911__AT4G23882.1 1304 0.0
> Ahg492478 jgi|Araly1|492478|fgenesh2_kg.7__1911__AT4G23882.1
Length=1005
Score = 1304 bits (706), Expect = 0.0
Identities = 923/1024 (90%), Gaps = 30/1024 (3%)
Strand=Plus/Plus
Query 3 GATTTCGTACGTGGATATTCAACAAATGACGTTACACTTGATTATGAAGATACCAAGTAC 62
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GATTTCGTTCGTGGATATTCAACAAATGACGTTACATTTGATTATGAAGATACCAAGTAC 60
Query 63 AATATCAAGAGAACATGGAAA-GTTGTATAA-ATTCAGGCGAA-TCCAGCAATATATCAA 119
|||||||| | || ||||||| || ||| || || | || ||||||||||||||||
Sbjct 61 AATATCAAAAAAATATGGAAACCATG-CTAATATACA--CCAATTCCAGCAATATATCAA 117
Query 120 AACGTCTATGGACTCATTTTTGAAAGTAACTTATC-TCATATTTATAGTCGTCTTCTACA 178
|||||||||||||||||||| |||||||| | ||| | ||| || ||| |||| ||||
Sbjct 118 AACGTCTATGGACTCATTTTGGAAAGTAAATAATCAT-ATACCCATTGTCTTCTTTTACA 176
Query 179 TTAGAGTTTCAAGTAAAGGTGC--TTATGCAATGGCAAACCTATCTCCACCCGTTCGAAC 236
|||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||
Sbjct 177 TTAGAGTTTCAAGTTGAGGTGCTTTTATGCAATGTCAAACCTATCTCCACCAGTTCGAAC 236
Query 237 TTGCGTTCTGAGAGTTGGAATCAAGTGTTGCAAAGGCTGCCAGACAAAAGCAAAGAGAAA 296
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 237 TTGCGTTCTGAGAGTTGGAATCAAGTGTTGCAAAGGTTGCCAGACCAAAGCAAAGAGAAA 296
Query 297 GTTGCTAAATGTCTCTGGGGT-GAGTACAGTTGAGTATAACGCAGAACAAGGGCTCTTGA 355
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
Sbjct 297 GTTGCTAAATGTCTCTGGGGTGGA-TGCAGTTGAGTATAACGCAGAACAAGGGCTCTTAA 355
Query 356 CAGTCACAGGTGATGCCAACCCAACAACATTGCTTCATAAGCTTACGAAATGGGGCAAAA 415
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 356 CAGTCTCAGGTGATGTTAACCCAACAACATTGCTTCATAAGCTTACCAAATGGGGTAAAA 415
Query 416 AGGCAGAACTAGTCTCTTTTCTTGGAGACAACTACTCTTCCCATGTTCCTAGAACCCCGG 475
|||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 416 AGGCAGAACTTGTCTCTTTTCTTGGAGAC-A--ACTCTTCCTTTGTTCCTAGAACCCCAG 472
Query 476 AACAAAACCAAAACAAGACAATGGAGAAGAAAAAGAAGAAGCCAACAAAGTGTTGTCTTC 535
||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 473 AACAAAACCAAAACAAGACAATGGAGAAGAAGGAGGAGAAGCCAACAAAATGTTGTCTTC 532
Query 536 TAATGTGTTTTGGAAATAAGAGAAGCAAGAACACAAAGATTGAGCCTATGGCGATACCAA 595
||||||||||||| | || |||||||||||||||||| |||||||||||||||| ||||
Sbjct 533 TAATGTGTTTTGG-GA-AA-AGAAGCAAGAACACAAAGGTTGAGCCTATGGCGATGCCAA 589
Query 596 ACTGGCAA-TATCGAGGAGTA-GGAAATGAAAATGGCAATGCCAGGCCTTTCATTAACGC 653
||||| || ||||||||| || ||| | ||||| || ||||||| ||| |||||||||||
Sbjct 590 ACTGG-AACTATCGAGGAATAGGGACA-GAAAACGGGAATGCCACGCCCTTCATTAACGC 647
Query 654 GGCAATGTCACCTCCAATGGTGTATCCTCCTCCACAAGCAGTGCCTGGCTTCACAACACC 713
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 648 TGCAATGTCACCTCCAATGGTGTACCCTCCTCCACAAGCAGTGCCTGGCTTTAAAACACC 707
Query 714 CATACCATACCCTCCTCCTAGtttttttCCAGG-AAGACCACCACCACCATACACTGGTG 772
|||||||||||||||||||| || |||| || ||||| ||||||||||||||||||||
Sbjct 708 CATACCATACCCTCCTCCTAATTATTTT-GGGGCAAGACAACCACCACCATACACTGGTG 766
Query 773 CTGGTATGTTCCAGTCAGCTCCACCACAATCCCCACCATATTTTCCAGTTCCCAACCCTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 767 CTGGTATGTTCCAGTCAGCTCCACCACAATCCCCACCATATTTTCCAGTTCCCAATTCTA 826
Query 833 GGCTGCATTACCCGCACCACTGATACAGTTCTTTCAGACGATACATTCATTGCCTGTTTC 892
||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |||| |
Sbjct 827 GGCTGCATTACCCGCACCACTGACAAAGTTCTTTCAGACGATACATTTATTGCTTGTT-C 885
Query 893 TTCTCTT-AGCTATGACTCAAATGCTGAGTAATAATAAGATGGTAAATTCTTTTCAACAT 951
||||||| ||||||||||||| ||||||||||||| | |||| || |||||||||||||
Sbjct 886 TTCTCTTTAGCTATGACTCAA-TGCTGAGTAATAAGATGATG--AA-TTCTTTTCAACAT 941
Query 952 GTAAGGTATATGAAGAAATGCAAATGAATGATTTCCACAATAAGGCAGACTAGAAAACAC 1011
|||||| |||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 942 GTAAGGGATATGAAGAAATGCAAATGAATGATTTCCAAAAGAAAGCAGACTAGAAAACAT 1001
Query 1012 ATAT 1015
||||
Sbjct 1002 ATAT 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5