BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23885.1
Length=539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945721 jgi|Araly1|945721|scaffold_701950.1 387 6e-107
> Ahg945721 jgi|Araly1|945721|scaffold_701950.1
Length=271
Score = 387 bits (209), Expect = 6e-107
Identities = 256/277 (92%), Gaps = 9/277 (3%)
Strand=Plus/Plus
Query 60 ACGAAAGAGCGAAA-AGAAGATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCA 118
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACGAAAGAGCGAAAGAGAAGATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCA 60
Query 119 AATTCCCTCAGAGACATATTAATCCTTCAG-CTTCAGAGGGAAAGAGTCAGGTGGCAAAT 177
|||| || ||| | ||| | |||||||||| || |||||||||||| |||||||||||||
Sbjct 61 AATTTCCACAGCGTCATGTCAATCCTTCAGTCT-CAGAGGGAAAGACTCAGGTGGCAAAT 119
Query 178 GAAGCTGATACATTGTTCTTCTCCAATTTGAACAACATCCAAAAGACTACT-GGCGGGAA 236
|||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 120 GAAGCTGATACATTATTCTTCTCCAATTTGAACA---TCCAAAAGACTA-TAGGCGGGAA 175
Query 237 GGCATCATCGCAGCCAAAGCGCACGCCAGTTTCAAACGAAGAAATGGAAGCCATTTTGTT 296
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 176 GGCGTCATCGCAGCCAAAGCGTACGCCAGTTTCTAACGAAGAAATGGAAGCCATTTTGTT 235
Query 297 GGGAGGCTGCATCTGATCATTTCAACATGATCTGTTG 333
|||||||||| |||||||||| |||||||||||||||
Sbjct 236 GGGAGGCTGCCTCTGATCATT-CAACATGATCTGTTG 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19650128335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5