BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G23885.1 Length=539 Score E Sequences producing significant alignments: (Bits) Value Ahg945721 jgi|Araly1|945721|scaffold_701950.1 387 6e-107 > Ahg945721 jgi|Araly1|945721|scaffold_701950.1 Length=271 Score = 387 bits (209), Expect = 6e-107 Identities = 256/277 (92%), Gaps = 9/277 (3%) Strand=Plus/Plus Query 60 ACGAAAGAGCGAAA-AGAAGATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCA 118 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGAAAGAGCGAAAGAGAAGATGAACGTAGTTCACGGTTTGAAGAGGATTCCTCGCATCA 60 Query 119 AATTCCCTCAGAGACATATTAATCCTTCAG-CTTCAGAGGGAAAGAGTCAGGTGGCAAAT 177 |||| || ||| | ||| | |||||||||| || |||||||||||| ||||||||||||| Sbjct 61 AATTTCCACAGCGTCATGTCAATCCTTCAGTCT-CAGAGGGAAAGACTCAGGTGGCAAAT 119 Query 178 GAAGCTGATACATTGTTCTTCTCCAATTTGAACAACATCCAAAAGACTACT-GGCGGGAA 236 |||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||| Sbjct 120 GAAGCTGATACATTATTCTTCTCCAATTTGAACA---TCCAAAAGACTA-TAGGCGGGAA 175 Query 237 GGCATCATCGCAGCCAAAGCGCACGCCAGTTTCAAACGAAGAAATGGAAGCCATTTTGTT 296 ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 176 GGCGTCATCGCAGCCAAAGCGTACGCCAGTTTCTAACGAAGAAATGGAAGCCATTTTGTT 235 Query 297 GGGAGGCTGCATCTGATCATTTCAACATGATCTGTTG 333 |||||||||| |||||||||| ||||||||||||||| Sbjct 236 GGGAGGCTGCCTCTGATCATT-CAACATGATCTGTTG 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19650128335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5