BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23890.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945720 jgi|Araly1|945720|scaffold_701949.1 1197 0.0
> Ahg945720 jgi|Araly1|945720|scaffold_701949.1
Length=797
Score = 1197 bits (648), Expect = 0.0
Identities = 738/782 (94%), Gaps = 3/782 (0%)
Strand=Plus/Plus
Query 111 AAAATAGTTATGGCGACTTCTTCGATCACTATCCCGACCATTAGAACTCCGATTCATCGA 170
|||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 15 AAAA-AGTTATGGCAACTTCTTCGATCACTATCCCGACCATGAGAACTCCGATTCATCGA 73
Query 171 TCAAAATTTCTAGGCCAAACACATCAATTTTCAACTGTAAACCGGTCGGTTTTCCCGCCT 230
|| ||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||
Sbjct 74 TCGAAATTTCTAGGCCAAACCCATCAATTTTCAACTGCAAACCAGTCGATTTTCCCGCCT 133
Query 231 CCAAAACAGCAGTCAAAACTGTATCAAGTAAAGGCCATGGGTAAATTCAATCTATGGGAA 290
|| |||||||| |||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 134 CCGAAACAGCAATCAAGAGTTTATCAAGTGAAGGCCATGGGTAAATTCAATCTATGGGAA 193
Query 291 GTGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGTATTGAGAAGGAGCTCCAGAGG 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 194 GTGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGTATTGAGAAGGAGCTCAAGAGG 253
Query 351 AACATTGAAGACGAGCAAGAGACATCAAAGGCTGAGAACAACGAGACagagagagagagC 410
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 254 AACATTGAAGACGAGCAAGAGACATCAAAGGCTGAGAACAACGAGACAGAGAAAGAGAGC 313
Query 411 GATGACAGTAACTTGTCTTTTAAAGTACCTGAAGATGGTTTCGAGAAAGAGATGATGGGT 470
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 314 GATGACAGTAACTTGTCGTTTAAAGTACCTGAAGATGGTTTTGACAAAGAGATGATGGGT 373
Query 471 CTCACAGGAGGATTTCCCGGTGGCGAAAAGGGTTTAAAAACGTTTATCGaaaaaaaTcca 530
||||| |||||||||||||||||||||||||| || ||||||| || |||||||| |||
Sbjct 374 CTCACTGGAGGATTTCCCGGTGGCGAAAAGGGATTGCAAACGTTCATTGAAAAAAACCCA 433
Query 531 ccacctcctcc-accaccaccaccTGCAAAACAAGGAAGCGATGCATCCGCGGTTGCTAC 589
||||| || || | | |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 434 CCACCGCCACCGA-CGCCACCACCTGCAAAACGAGGAACCGATGCATCCGCGGTTGCTAC 492
Query 590 AGATAAGAAGCCGAAAGCGCCCAAGCTACCCCTTCTCATGCCGGGGATGATTGCTATAGT 649
|||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 493 AGATAAGAAGCCGAAAGCGCCCGAGCTACCCCTTCTCATGCCGGGAATGATCGCTATAGT 552
Query 650 CAAGAACCAGAACAGTCCGTATCACATGTATTGTGGAATTGTGCAGAGGATCACTGATGG 709
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 553 CAAGAACCAGAACAGCCCGTATCACATGTATTGTGGGATTGTGCAGAGGATCACTGATGG 612
Query 710 AAAAGCTGGTGTCTTGTTCGAAGGAGGAAACTGGGACCGTCTCATTACTTTCAGGCTTGA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AAAAGCTGGTGTCTTGTTCGAAGGAGGAAACTGGGACCGTCTCATTACTTTCAGGCTTGA 672
Query 770 AGAGCTTGAACGAAGAGAAAAAGGTCCACCGGGTAAGAATCCAAAGTCTTGTATTCTCGA 829
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 673 AGAGCTCGAGCGAAGAGAGAAAGGTCCACCGGGTAAGAATCCAAAGTCTTGTATTCTTGA 732
Query 830 GCCTCTTATCGAACAGATGCAAAAGGAAGAGGCAGCACCATAAGTGATCTTCTCTTCTCT 889
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 733 GCCTCTTATCGAACAGATGCAAAAGGAGGAGGCAGCACCATAAGCGATCTTCTCTTCTCT 792
Query 890 GT 891
||
Sbjct 793 GT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5