BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23895.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492476 jgi|Araly1|492476|fgenesh2_kg.7__1909__AT4G23895.1 1653 0.0
> Ahg492476 jgi|Araly1|492476|fgenesh2_kg.7__1909__AT4G23895.1
Length=1132
Score = 1653 bits (895), Expect = 0.0
Identities = 1069/1150 (93%), Gaps = 24/1150 (2%)
Strand=Plus/Plus
Query 1 GAAGCAGTAAGCACTCAACCAAAAAACCAATTGCGT--AAACACTTTCCCTTGAATACAG 58
|||||||||||||| ||||||||||| ||||||||| |||||||||||| | |||||||
Sbjct 1 GAAGCAGTAAGCACCCAACCAAAAAAACAATTGCGTCAAAACACTTTCCCGTAAATACAG 60
Query 59 AGATCACATTCGATCAGCGAGCTGATTTCTCACAAGGGATATCAAAATTTCTGGTGAAGT 118
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 61 AGATCACATTCGATCAGCGAGCTGATTTCT--C-------ATCAAAATTTCCGGTGAAGT 111
Query 119 GGGATTGTAAAATTCGGCGTTGAAAGATATATAAAGAGTGGAAGGTTCTGGAGTCGTTTC 178
||| ||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||
Sbjct 112 GGGGTTGTAAAATTCGGCGTTGAAAGATATAAAAAAAGTGAAAGTTTCTGGAGTCGTTTC 171
Query 179 AATTCATGGATGATGGTACTCCTAAGAAGCTAAACATATTACCTGATCACTTTAGTGCTC 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AATTCATGGATGATAGTACTCCTAAGAAGCTAAACATATTACCTGATCACTTTAGTGCTC 231
Query 239 CTAGTCCCACAGCAGAATCTTCTCAGCACGATACTCCATCATCTTCGCAGCCAAAGGACG 298
||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 232 CTAGTTCCACAGCAGAATCTTCTCAGGACGATACTCCATCATTTTCGCAGACAAAGGACG 291
Query 299 ATAGTTCTCTGAGGCCTTATAGCCAGTCACGGACTCGCAGAAACCTGAAAAGAGCAGCAA 358
||| |||||||||| || |||||||||||||||||| |||||| |||||||||||||||
Sbjct 292 ATATTTCTCTGAGGTCTCGTAGCCAGTCACGGACTCGTAGAAACTTGAAAAGAGCAGCAA 351
Query 359 CTATGTTGAATTTGTTCACTCTTCGCCGTCTGCCTTGGGTTTCAGATGGTCAAGAGAAGG 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 352 CTATGTTGAATTTGTTCACTCTTCGCCGTCTTCCTTGGGTTTCAGATGGTCAAGAGAAGG 411
Query 419 TCGAGCTATCAGCAGCGGAGTTAGAATCACTTAGATCAGAACTTTCTGATATGGAAGAAA 478
| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 412 TAGAGCTGTCAGCAGCGGAGTTAGAATCACTTAGATCAGAGCTTTCTGATTTGGAAGAAA 471
Query 479 GAGAAGCTTACCTCAAAGCCCAGTTGGAACATGTGGATGAAGTCTTGCGCTCTGCCCGTT 538
||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||
Sbjct 472 GAGAAGCTTACCTCAAAGCTCAGTTGGAACATGTAGACGAAGTCTTGCGCTCTGCTCGTT 531
Query 539 TATCTGGTTATTTGTTTATCAGAAGTCGTTGGGCAGCTCTTCCGGGTGAACCACCACCAA 598
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 532 TATCTGGTTATTTGTTTATCAGAAGTCGTTGGGCAGCTCTTCCGGGGGAACCACCACCAA 591
Query 599 TAGATGATACAGAAGTAGACGACTGGCTTCCTCGGTTTGTCGTCCTTCAAGGCCCTTGTC 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TAGACGATACAGAAGTAGACGACTGGCTTCCTCGGTTTGTCGTCCTTCAAGGCCCTTGTC 651
Query 659 TTTTCTTCTATTTATTGTCAACAGACTTGAGCCCTCAAGATTCGACATTGCTAGCAGATA 718
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 652 TTTTCTTCTATTTATTGTCAACAGACTTGAGCCCGCAAGATTCGACATTGCTGGCGGATA 711
Query 719 TTGTTGAAATTGGTTCGGTACCAAGCTACACGAGAGAATTCGATGAAACCCATTATTGCT 778
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTGTAGAAGTTGGTTCGTTACCAAGCTACACGAGAGAATTCGATGAAACCCATTATTGCT 771
Query 779 TTTACATATTAACCCGTCAAGGTCTAAGATTTGAGTGCTCAAGCACCTCTAAAACACAGG 838
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTTACATCTTAACCCGTCAAGGTCTAAGATTTGAGTGCTCAAGCACCTCTAAAACACAGG 831
Query 839 TTGATTCGTGGTTGTCGGTTTTGCGCCTTGATTGCAAGTCTGAACCAGAAGAAAGGTTAT 898
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 832 TTGATTCGTGGTTGTCGGTATTGCGCCTTGATTGCAAGTCTGAACCAGAAGAAAGGTTAC 891
Query 899 CAAATGGATCA-GTCGAAGCTCCAGAATAAATTGAAGAGCGGTCACTGCTCTGGATAGTT 957
|||| |||||| | |||||| ||| ||||||||||||| ||||| ||||||| ||||||
Sbjct 892 CAAACGGATCAAG-CGAAGCGCCACAATAAATTGAAGATTGGTCATTGCTCTGTATAGTT 950
Query 958 TTCATTTA-TATGTATATAAT--GCTTCTTTTTAGATGTAGTAGAATTCACGTCAATGAA 1014
||||||| | |||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 951 TTCATTTTCTGTGTATATAATATGCTTCTTTT-AGATGTAGCAGAATTCACGTCAATGAA 1009
Query 1015 AGGTTCTTTTACTGAACTGGTGGTTACAATATTTTTGGTTTACTTCTTTTAGCTGCTAAA 1074
|||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1010 AGGTTCTTTTACTGAACTGGTGATTACAATTTTTTTGATTTACTTCTTTTAGCTGCTAAA 1069
Query 1075 GACATTGGAATATATTCGTTTCTTGAATAGGCAATAATTCTAGTTGGAAAACAAAAGTGA 1134
|||||||||||||||||||| ||||||||||||||| || | | |||| ||| ||||
Sbjct 1070 GACATTGGAATATATTCGTTACTTGAATAGGCAATA-TT---G--GAAAAAGAAA-GTGA 1122
Query 1135 TTAGAAAGGC 1144
||||||||||
Sbjct 1123 TTAGAAAGGC 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5