BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23900.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489940 jgi|Araly1|489940|fgenesh2_kg.6__3074__AT4G11010.1 725 0.0
Ahg492474 jgi|Araly1|492474|fgenesh2_kg.7__1907__AT4G23900.1 564 5e-160
> Ahg489940 jgi|Araly1|489940|fgenesh2_kg.6__3074__AT4G11010.1
Length=911
Score = 725 bits (392), Expect = 0.0
Identities = 620/728 (85%), Gaps = 23/728 (3%)
Strand=Plus/Plus
Query 52 AAAATGAGCTCCCAAATCTGCAGATCTGCTTCTAGAGCAGCCAGGTCTCTTCTTTCTTCA 111
|||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 58 AAAATGAGCTCCCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTTTCTTCA 117
Query 112 GCCAAGAATGCTCGTTTCTTCTCCGAAGGCCGAGCCATTGGTGCAGCAAG-TGTGG-TGC 169
|| || ||||||||||||||||||||||| ||||||||||||| || | | || | |
Sbjct 118 GCTAAAAATGCTCGTTTCTTCTCCGAAGGAAGAGCCATTGGTGCTGC-GGCAGCGGTTTC 176
Query 170 ATGCGACTGGAAAAG-TCCCTCAGTATGCATCCAACTTTGGAA-A--ATCGGGTTCT-G- 223
||| | || ||| | ||| ||||||||| ||||||| || | ||| |||||| |
Sbjct 177 -GGCGTC-GGGGAAGATTCCTTTGTATGCATCTAACTTTGTAAGATCATCAGGTTCTGGT 234
Query 224 GCTTCGTCTCTAATAGCTGGATCACCGGACTCCTT-GCTCTTCCTGCTGCAGCCT-TCAT 281
| ||| ||| || || |||||||| ||||| ||| ||||||||||||||||||| | ||
Sbjct 235 GTTTC--CTCAAAGAGTTGGATCACTGGACT-CTTAGCTCTTCCTGCTGCAGCCTAT-AT 290
Query 282 GCTCCAAGATCAGGAAGCACTTGCTGCAGAGATGGAACGCACTTTCATCGCTATCAAACC 341
| | |||||||| || | |||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 291 GATTCAAGATCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATCGCTATCAAGCC 350
Query 342 TGATGGAGTGCAGCGAGGACTGATATCAGAAATCATTACACGGTTCGAACGCAAAGGATA 401
|||||||||||||||||||||||||||||| |||||| | || ||||||||||| ||||
Sbjct 351 TGATGGAGTGCAGCGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATT 410
Query 402 CAAGCTTGTTGGCATTAAAGTCATGGTTCCTTC-AAAGGGTTTCGCGCAGAAGCATTACC 460
|||||||||||| || |||||||| |||||||| |||| |||||| || ||||||||||
Sbjct 411 CAAGCTTGTTGGTATCAAAGTCATTGTTCCTTCCAAAGA-TTTCGCACAAAAGCATTACC 469
Query 461 ATGATCTAAAGGAGAGACCTTTCTTCAACGGCTTGTGTAACTTCCTTAGCTCAGGCCCTG 520
||||||| ||||| |||||||||||||| ||| ||||| ||||||||||||| || ||||
Sbjct 470 ATGATCTTAAGGAAAGACCTTTCTTCAATGGCCTGTGTGACTTCCTTAGCTCTGGTCCTG 529
Query 521 TTGTTGCCATGGTATGGGAAGGTGAAGGAGTGATTAGATACGGACGTAAACTGATTGGAG 580
|| |||||||||| |||||||| || || ||||| ||||||||||||||||| |||||||
Sbjct 530 TTATTGCCATGGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTAATTGGAG 589
Query 581 CCACTGATCCTCAGAAATCAGAACCTGGAACTATCCGAGGCGATCTCGCTGTTGTTGTTG 640
||||||||||||||||||| || |||||||| |||||||| ||||| || ||| |||||
Sbjct 590 CCACTGATCCTCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTG 649
Query 641 GAAGGAACATTATACATGGAAGCGATGGACCAGAGACAGCTAAAG-ACGAGATCAG-CTT 698
| |||||||| || |||||||| ||||||||||||||||| |||| | |||||||| ||
Sbjct 650 GCAGGAACATAATCCATGGAAGTGATGGACCAGAGACAGC-AAAGGATGAGATCAGTCT- 707
Query 699 GTGGTTTAAGCCTGAAGAACTCGTTTCTTACACTAGTAACGCTGAGAAGTGGATCTACGG 758
||||||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||
Sbjct 708 GTGGTTTAAGCCTCAAGAACTTGTTTCTTACACCAGTAACTCTGAGAAGTGGCTCTATGG 767
Query 759 CCAGAACT 766
| | ||||
Sbjct 768 CGACAACT 775
> Ahg492474 jgi|Araly1|492474|fgenesh2_kg.7__1907__AT4G23900.1
Length=937
Score = 564 bits (305), Expect = 5e-160
Identities = 470/543 (87%), Gaps = 37/543 (7%)
Strand=Plus/Plus
Query 311 AGATGGAACGCACTTTCATCGCTATCAAACCTGATGGAGTGCAGCGAGGAC-----TG-- 363
||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct 288 AGATGGAACGCACTTTCATCGCTATCAAACCCGATGGGGTGCAGCGAGGACTGGTTTGTT 347
Query 364 ----ATATCAGAAATCATTACACGGTTCGAACGCAAAGGATACAAGCTTGTTGGCATTAA 419
||||||||||||||| ||||||||||||||||||||||||||||||||| || ||
Sbjct 348 ACTTATATCAGAAATCATTTTACGGTTCGAACGCAAAGGATACAAGCTTGTTGGTATCAA 407
Query 420 AGTCATGGTTCCTTCAAAGGGTTTCGCGCAGAAGCATTACCATGATCTAAAGGAGAGACC 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 408 AGTCATGGTTCCTTCAAAGGGTTTTGCGCAGAAGCATTACCATGATCTAAAGGAGAGACC 467
Query 480 TTTCTTCAACGGCTTGTGTAACTTCCTTAGCTCAGGCCCTGTTGTTGCCATGGTATGGGA 539
||||||||| | | | |||||||| |||| ||||||||||||||||||||||||
Sbjct 468 TTTCTTCAA---C--G-G---CTTCCTTATTTCAGTCCCTGTTGTTGCCATGGTATGGGA 518
Query 540 AGGTGAAGGAGTGATTAGATACGGACGTAAACTGATTGGAGCCACTGATCCTCAGAAATC 599
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 519 AGGTGAGGGAGTGATTAGATACGGACGTAAACTGATTGGAGCTACAGATCCTCAGAAATC 578
Query 600 AGAAC-CTG--GAACTATCCGAG-GCGATCTCG-CTGTTGTTGT--T-G--GA-AGGAAC 648
| ||| | | | ||| | | | | ||||| || | | | | ||||||
Sbjct 579 ---TCTCTGTTGTTGT-TGGGAGTATGTTTTAGTCTGTT-TTCTCATAGATTATAGGAAC 633
Query 649 ATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATCAGCTTGTGGTTTAAG 708
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 634 ATTATACATGGAAGCGATGGACCAGAGACAGCTAAAGACGAGATAAGCTTGTGGTTTAAG 693
Query 709 CCTGAAGAACTCGTTTCTTACACTAGTAACGCTGAGAAGTGGATCTACGGCCAGAACTGA 768
||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||
Sbjct 694 CCTGAAGAACTCGTTTCTTTCACTGGCAATGCTGAGAAGTGGATCTACGGCCAGAACTGA 753
Query 769 ACTATTCCCTCTTTCTCCCTTATTTTCAACCGTTAGATCAGACATAAATAATTACT-TCt 827
|||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||| | |
Sbjct 754 ACTAATCCATCTTTCTCCCTTATTTTCAGCCGTTAGATCAAACATAAATAATTACTGTTT 813
Query 828 ttt 830
|||
Sbjct 814 TTT 816
Score = 204 bits (110), Expect = 1e-51
Identities = 123/129 (95%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 10 TTTGCACATCACTCTTCTCAGTCCTCACGCATCGTATCAGAGAAAATGAGCTCCCAAATC 69
||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct 1 TTTGCACATCACTCTTCTCAGTCCTCACGCATCTTATAAGAGAAAATGAGCTCTCAAATC 60
Query 70 TGCAGATCTGCTTCTAGAGCAGC-CAGGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTT 128
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAGATCTGCTTCCAGAGCAGCGC-GGTCTCTTCTTTCTTCAGCCAAGAATGCTCGTTT 119
Query 129 CTTCTCCGA 137
|||||||||
Sbjct 120 CTTCTCCGA 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5