BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23910.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492473 jgi|Araly1|492473|fgenesh2_kg.7__1906__AT4G23910.1 1048 0.0
> Ahg492473 jgi|Araly1|492473|fgenesh2_kg.7__1906__AT4G23910.1
Length=807
Score = 1048 bits (567), Expect = 0.0
Identities = 744/825 (90%), Gaps = 29/825 (4%)
Strand=Plus/Plus
Query 1 TTGGAATCCGCCGACTCCATTATAAAATCTCAGAGAA-CTAGTTCA-GC--TG-CGAGTT 55
||||||||||||||||||||||| | | ||| || || ||| | || || ||||||
Sbjct 1 TTGGAATCCGCCGACTCCATTAT---A--TAAGAAAATCTGGTTTATGCTGTGACGAGTT 55
Query 56 GACTC-GTTCATCGGCTTCTTCAGAACGATACTTTAGCTTCGACCTCTCT--CTCCGATC 112
||||| | |||||| ||| ||||||| ||| ||||||||| ||||||||| ||||||||
Sbjct 56 GACTCAG-TCATCGTCTTGTTCAGAAAGATTCTTTAGCTTGGACCTCTCTCGCTCCGATC 114
Query 113 ATCTTCTTCGTCGCTTTCCCTAATCGTTTTCTCTTGCAAGGTTCTTACTTCATAATTC-- 170
||||||||||| || || || ||| |||||||||||||||||||||||||||| ||
Sbjct 115 ATCTTCTTCGT--CTCTCTCTCGTCGCTTTCTCTTGCAAGGTTCTTACTTCATAA-TCGG 171
Query 171 -ATGGAGACTGGAACACCACTTATAGCGGAGACCATTGCCCTCACTGAAAAGAAAGTCGC 229
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TATGGAGACTGCAACACCACTTATAGCGGAGACCATTGCCCTCACTGAAAAGAAAGTCGC 231
Query 230 CATGGCTTTAGATGATATTATCAAGTTGGCAAAGAGAAAGACCAATGTGAATAAGGGCAA 289
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 232 CATGGCTTTAGATGATATCATCAAGTTGGCAAAGAGAAAGTCCAATGTGAATAAGGGCAA 291
Query 290 GAAACCAAGGAGAGAAAAGAACAAAAACCAAAACTTTAATGGTGCTGCGAGAAATAATAC 349
|||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 292 GAAACCAAGGAGAGGAAAGAACAAAACCCAAAACTTTAACGGTGCTGCCAGAAATAATAC 351
Query 350 CTCTAATGTGCGCCATCATATGAACTCACTTTCTGCTGTTAGACAGGGTGCTGTTGGTAA 409
|||||||||| | |||| | | | |||||||||||||||||||||||||||||||
Sbjct 352 CTCTAATGTGTGGCATC------A-T-A-TTTCTGCTGTTAGACAGGGTGCTGTTGGTAA 402
Query 410 GAGAAGGTCTAGGTTCCAAGGAATTCAATTTCCTGTAACAACAAACATTGCTCGTAAAGC 469
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 403 GAGAAGGTCTAGGTTCCAAGGAAATCAATTTCCTGTAACAACAAACATTGCTCGTAAAGC 462
Query 470 TTCTACTGCTGCTCCACTCGATTTCCGCGGTAGAGCTTTTAATGGTGGAAGGATGACTAG 529
| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 463 TGCTCCTGCTGCTCCACTCGATGCCCGCGGTAGAGCTTTTAATGGTGGAAGGACGACTAG 522
Query 530 TGCCAATCAGTCAAGGCTTATTGCTCCACCAGTTCAAAATATATCTGTACAGGCTAGAGT 589
| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TACTTATCAGTCAAGGCGTATTGCTCCACCAGTTCAAAATATATCTGTACAGGCTAGAGT 582
Query 590 CAACGCAAAGAGGCATGAGGTAGATCAGAAAGTAGAACACAGAGGAGGGAAGAGGAAGAC 649
||||||||||||||| || |||||| |||||||||||||||| ||| |||||||||||||
Sbjct 583 CAACGCAAAGAGGCAAGAAGTAGATGAGAAAGTAGAACACAGCGGATGGAAGAGGAAGAC 642
Query 650 ACTGGACTCTCGCTTTGCAAGCATGAAAGAGCAGAGAATGACGATTAACAACTATGGTGT 709
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATTGGACTCTCGCTTTGCAAGTATGAAAGAGCAGAGAATGACGATTAACAACTATGGTGT 702
Query 710 TACAGTGCAAGTTCCAAGATTACCACCATGGGTTAGAGCCAGAAGATTTTCCCAATGAGA 769
|||||| ||||||||||| || |||||||||| ||||||||||||||||| ||| |||||
Sbjct 703 TACAGTACAAGTTCCAAGGTTGCCACCATGGGCTAGAGCCAGAAGATTTTTCCACTGAGA 762
Query 770 AACCACAAAGCTTTTACGGGTTGTTCCAGTTTAGAATTTGGCTTT 814
|||||||||||||||| || || ||||| |||||| ||||| |||
Sbjct 763 AACCACAAAGCTTTTATGGATTTTTCCAATTTAGATTTTGGGTTT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5