BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23920.1
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492472 jgi|Araly1|492472|fgenesh2_kg.7__1905__AT4G23920.1 1829 0.0
Ahg942923 jgi|Araly1|942923|scaffold_603467.1 1061 0.0
> Ahg492472 jgi|Araly1|492472|fgenesh2_kg.7__1905__AT4G23920.1
Length=1292
Score = 1829 bits (990), Expect = 0.0
Identities = 1156/1232 (94%), Gaps = 27/1232 (2%)
Strand=Plus/Plus
Query 128 TCTCTCTTAACGATGGCGAAGAGTGTTTTGGTTACCGGCGGCGCTGGCTATATCGGAAGT 187
||||| |||||||||||||||| |||||||||||||||||||||| || ||||| |||
Sbjct 86 TCTCTATTAACGATGGCGAAGAACATTTTGGTTACCGGCGGCGCTGGTTACATCGGGAGT 145
Query 188 CATACTGTTCTTCAACTGCTTGAAGGTGGTTACTCCGCCGTCGTTGTTGACAATTACGAC 247
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 146 CATACTGTACTTCAACTGCTAGAAGGTGGTTACTCCGCCGTCGTTGTTGACAATTACGAC 205
Query 248 AATTCCTCTGCTGCTTCGCTTCAGCGCGTGAAGAAACTCGCCGGCGAAAACGGAAACCGC 307
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 206 AATTCCTCCGCTGCTTCGCTTCAGCGCGTGAAGGAACTCGCCGGCGAAAACGGAAACCGC 265
Query 308 CTCTCCTTCCACCAGGTGGATCTCCGAGACAGGCCTGCGCTTGAGAAGATATTCTCAGAA 367
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 266 CTCTCTTTTCACCAGGTGGATCTTCGAGACAGGCCTGCGCTTGAGAAGATTTTCTCAGAA 325
Query 368 ACAAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGTGAGAGTGTGGAG 427
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 326 ACTAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGCGAGAGTGTGGAG 385
Query 428 AAGCCTTTGCTCTATTATAATAATAA-CATTGTTGGCACTGTTACTCTTTTGGAGGTTAT 486
|||||| ||||||||||||||||||| | ||||||| ||| |||||||||||||||||||
Sbjct 386 AAGCCTCTGCTCTATTATAATAATAATC-TTGTTGGTACTATTACTCTTTTGGAGGTTAT 444
Query 487 GGCTCAATACGGCTGCAAAAATCTTGTATTTTCATCATCAGCTACTGTCTATGGCTGGCC 546
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 445 GGCTCAATACGGCTGCAAAAATCTTGTGTTTTCATCATCAGCTACTGTCTATGGCTGGCC 504
Query 547 TAAGGAGGTTCCTTGCACTGAGGAGTCACCAATTTCTGCCACTAACCCATATGGCCGTAC 606
||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 505 TAAAGAGGTTCCTTGCACTGAGGAGTCCCCAATTTCTGCCACAAACCCATATGGCCGTAC 564
Query 607 AAAGCTTTTTATCGAAGAGATTTGCCGGGATGTACATCGTTCTGACTCGGAATGGAAGAT 666
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 565 AAAGCTTTTTATCGAGGAGATTTGCCGGGATGTACATCGTTCTGACCCTGAATGGAAGAT 624
Query 667 CATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CATATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGA 684
Query 727 TCCTCTTGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TCCTCTTGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAG 744
Query 787 ACCTCACCTTACTGTCTTTGGAACCGACTACAAGACAAAGGATGGTACAGGGGTTAGAGA 846
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 745 ACCTCACCTTACTGTCTTTGGAACCGACTACAAAACAAAGGACGGTACAGGGGTTAGAGA 804
Query 847 TTACATTCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAGATGA 906
||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 805 TTACATTCATGTCATTGATTTAGCGGATGGACATATAGCCGCTCTGCGCAAGCTAGATGA 864
Query 907 TCTCAAAATCAGTTGTGAGGTATACAATCTTGGAACGGGTAATGGAACATCGGTCCTAGA 966
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 865 TCTCAAAATCAGTTGTGAGGTATACAATCTCGGAACGGGTAATGGAACGTCGGTCCTAGA 924
Query 967 AATGGTCGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCTTTGGTGATGGCTGGACG 1026
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 925 AATGGTTGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCGTTGGTGATGGCTGGAAG 984
Query 1027 ACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAGCGCGAACTAAA 1086
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 985 ACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAACGCGAACTGAA 1044
Query 1087 TTGGAAGGCTAAGAATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAA 1146
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTGGAAGGCTAAGTATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAA 1104
Query 1147 TAACCCCTACGGCTACAATTCCTCCTCCAATGGCTCCTCTTCATAATTCTCCttttttaa 1206
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1105 TAACCCTTACGGCTACAATTCCTCCTCTAATGGCTCCTCTTCATAATTCTCCTTTTTTA- 1163
Query 1207 tttttattttgccttttttGCTTACTTATATTCATATAAACAAACACATaaaaaaaaaGA 1266
||||| || || |||||| | ||||||||||||||||| ||||| |
Sbjct 1164 TTTTT-----GC-TT--------ACTTAT-T-CATATAAACAAACACATGAAAAA---G- 1203
Query 1267 AGAGAAAGGCTGACAAGTACCCAAACTTTAGAAGAAA-TTGAGGAAAATTCTTGTACTAT 1325
|||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||
Sbjct 1204 -GAGA--GGCTGACAAGTACCCAAACTTTAGAAGAAAATTGGGGAAAATTCGTGTACAAT 1260
Query 1326 CAATTTATCATAGAAACTATATTTATTAAATC 1357
|||||||||||||||||||||||||||||||
Sbjct 1261 TAATTTATCATAGAAACTATATTTATTAAATC 1292
> Ahg942923 jgi|Araly1|942923|scaffold_603467.1
Length=1096
Score = 1061 bits (574), Expect = 0.0
Identities = 902/1061 (85%), Gaps = 19/1061 (2%)
Strand=Plus/Plus
Query 139 GATGGCGAAGAGTGTTTTGGTTACCGGCGGCGCTGGCTATATCGGAAGTCATACTGTTCT 198
|||||| |||| ||| | || ||||| || ||||| || ||||| ||||| || || ||
Sbjct 23 GATGGCTAAGAACGTTCTAGTAACCGGTGGTGCTGGATACATCGGTAGTCACACGGTGCT 82
Query 199 TCAACTGCTTGAAGGTGGTTACTCCGCCGTCGTTGTTGACAAT-TACGACAATTCCTCTG 257
|||||| ||| ||||||||||||| ||| |||||||| ||| | ||| |||||||| |
Sbjct 83 TCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAATCT-CGATAATTCCTCAG 141
Query 258 CTGCT-TCGCTTCAGCGCGTGAAGAAACTCGCCGGCGAAAACGG-AAACCGCCTCTCCTT 315
| | | || ||| | || |||||||||||||||| |||| |||| || |||||||||||
Sbjct 142 CCG-TCTCTCTTGAACGTGTGAAGAAACTCGCCGCCGAACACGGCCAA-CGCCTCTCCTT 199
Query 316 CCACCAGGTGGATCTCCGAGACAGGCCTGCGCTTGAGAAGATATTCTCAGAAACAAAGTT 375
||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 200 CCACCAGGTGGATCTTCGAGACAAGCCTGCTCTTGAGAAGATATTCTCAGAAACTAAGTT 259
Query 376 TGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGTGAGAGTGTGGAGAAGCCTTT 435
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 260 TGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGTGTAGAGAAGCCTTT 319
Query 436 GCTCTATTATAATAATAA-CATTGTTGGCACTGTTACTCTTTTGGAGGTTATGGCTCAAT 494
|||||||||||||||||| | ||||||| ||| ||||||||||||| ||||||||||||
Sbjct 320 GCTCTATTATAATAATAATC-TTGTTGGGACTATTACTCTTTTGGAAGTTATGGCTCAAC 378
Query 495 ACGGCTGCAAAAATCTTGTATTTTCATCATCAGCTACTGTCTATGGCTGGCCTAAGGAGG 554
| ||||||||||||||||| |||||||||||||| ||||| ||||||| || ||||| |
Sbjct 379 ATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCCACTGTGTATGGCTCTCCAAAGGAAG 438
Query 555 TTCCTTGCACTGAGGAGTCACCAATTTCTGCCACT-AACCCATATGGCCGTACAAAGCTT 613
||||||| || ||||||| || ||||| || | | ||||||||||| || ||||||||
Sbjct 439 TTCCTTGTACAGAGGAGTTTCCGATTTCAGC-ATTGAACCCATATGGACGAACAAAGCTA 497
Query 614 TTTATCGAAGAGATTTGCCGGGATGTACATCG-TTCTGACTCGGAATGGAAGATCATATT 672
|| || || || || ||||| |||||| | || ||||||| |||||||||||||||||||
Sbjct 498 TTCATTGAGGAAATCTGCCGTGATGTATA-CGGTTCTGACCCGGAATGGAAGATCATATT 556
Query 673 GCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGATCCTCT 732
|||||| || || || |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 557 GCTTAGGTATTTTAATCCTGTTGGTGCACATCCTAGTGGTGAAATTGGTGAAGATCCTCG 616
Query 733 TGGAGTTCCCAACAATCTCATGCCTTATGTCCAACAAGTTGCAGTTGGCCGGAGACCTCA 792
|| |||||||||||||| ||||||| ||| |||||||| || ||||| ||||||||||
Sbjct 617 CGGTGTTCCCAACAATCTTATGCCTTTTGTACAACAAGTCGCTGTTGGTAGGAGACCTCA 676
Query 793 CCTTACTGTCTTTGGAACCGACTACAAGACAAAGGATGGTACAGGGGTTAGAGATTACAT 852
|| ||||||||||||| || ||||| ||||| ||||| ||||||||| ||||||||||
Sbjct 677 TCTAACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTTCGAGATTACAT 736
Query 853 TCATGTCATGGATTTAGCAGATGGACACATAGCTGCTCTGCGTAAGCTAGATGATCT-CA 911
|||||| || |||||||| |||||||||||||| ||| ||||||||||||| ||| | ||
Sbjct 737 TCATGTTATTGATTTAGCTGATGGACACATAGCGGCTTTGCGTAAGCTAGAAGAT-TGCA 795
Query 912 AAATCAGTTGTGAGGTATACAATCTTGGAACGGGTAATGGAACATCGGTCCTAGAAATGG 971
||||| ||||||| || |||||||| ||||| || |||||||||||||| || |||||||
Sbjct 796 AAATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCGGTTCTTGAAATGG 855
Query 972 TCGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCTTTGGTGATGGCTGGACGACGTC 1031
| | ||||||||||||||| ||||| |||||||||||| ||||||| |||||||| || |
Sbjct 856 TTGATGCCTTTGAAAAAGCGTCCGGGAAGAAAATCCCTCTGGTGATCGCTGGACGTCGCC 915
Query 1032 CTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAGCGCGAACTAAATTGGA 1091
| ||||| |||||||||||||||||||||||||||| |||||| || ||| | |||||||
Sbjct 916 CGGGAGATGCTGAAGTTGTTTACGCCTCAACGGAAAGAGCAGAACGTGAATTGAATTGGA 975
Query 1092 AGGCTAAGA-ATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGCAATAAC 1150
|||| || | |||| || |||||||||||||| ||| | ||||| ||||| || |||||
Sbjct 976 AGGCCAA-ATATGGAATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCCAGTAATAAT 1034
Query 1151 CCCTACGGCTACAATTCCTCCTCC-AATGGCTCCTCTTCAT 1190
|| || || || ||||||| || || | ||||||| |||
Sbjct 1035 CCTTATGGATATGATTCCTCTTCTGAA-GACTCCTCT-CAT 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5