BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23930.1
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492471 jgi|Araly1|492471|fgenesh2_kg.7__1904__AT4G23930.1 833 0.0
> Ahg492471 jgi|Araly1|492471|fgenesh2_kg.7__1904__AT4G23930.1
Length=579
Score = 833 bits (451), Expect = 0.0
Identities = 543/586 (93%), Gaps = 11/586 (2%)
Strand=Plus/Plus
Query 3 ATGTCGAAGTCTTGTTCAAACCTCGCTTCATGCGCCGTCGCCACGCTCTTCATAGTCTTC 62
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 ATGTCCAAGTCTTGTTCAAACCTCGCTTCATGCGCCGTCGCTACACTCTTCATAGTCTTC 60
Query 63 TTAATCATCGCCGCACTTACTGTTTATCTCACAGTCTTTAGACCGAGAGATCCTGAGATC 122
|| |||||||||| ||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct 61 CTACTCATCGCCGCCCTTACCGTTTATCTCACAGTATTTAGACCAAGAGATCCCGAGATC 120
Query 123 TCCGTCACTAGCGTCAAGGTTCCTTCATTCTCCGTCGCTAATAGCTCCGTTAGTTTCACC 182
| |||||| | ||||||||| || ||||||||||| || |||||||||||||| |||| |
Sbjct 121 TTCGTCACCAACGTCAAGGTCCCGTCATTCTCCGTTGCCAATAGCTCCGTTAGCTTCA-C 179
Query 183 TTT-TCTCAATTCTCCGCCGTTAGAAACCCTAACCGCGCAGCTTTCTCACACTACAACAA 241
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TTTCTCTCAATTCTCCGCCGTTAGAAACCCTAACCGCGCTGCTTTCTCACACTACAACAA 239
Query 242 TGTAATCCAGCTCTTTTACTATGGAAACCGGATCGGTTATACCTTCGTACCTGCTGGTGA 301
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CATAATCCAGCTCTTTTACTATGGAAACCGGATCGGTTATACCTTCGTACCGGCTGGTGA 299
Query 302 GATCGAATCGGGTCGAACCAAGCGTATGTTAGCTACTTTCTCCGTTCAGTCGTTTCCTCT 361
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATCCAATCGGGTCGAACCAAGCGTATGTTAGCTACTTTCTCCGTTCAGTCGTTTCCTCT 359
Query 362 CGCGG-CGGCCTCTAGTTCTCAAATCTCCGCCGCCCAATTTCAAAATTC-GGATCGGTCC 419
||||| || ||||||||||||||||||| ||||| | ||||| |||| ||||| |
Sbjct 360 CGCGGTCG-CCTCTAGTTCTCAAATCTCGGCCGCTGAGTTTCAGAATTTTGGATC---C- 414
Query 420 GGGTCAACAGTGGAAATAGAGTCGAAGCTGGAGATGGCGGGTCGGGTTCGGGTTCTCGGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 415 GGGTCAACAGTGGAAATAGAGTCGAAGCTGGAGATGGCGGGTCGGGTTCGGGTTTTCGGT 474
Query 480 TTGTTTACTCACCGAATCGCGGCTAAATGTAATTGTAGGATCGCGATTTCCTCGAGTGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 475 TTGTTTACTCACCGAATCGCGGCTAAATGTAATTGTAGGATCGCGATTTCCACGAGTGAT 534
Query 540 GGTTCCATCGTAGCCGTCCGTTGTTAATATTAAAAAACAA-TTGTA 584
|||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 535 GGTTCCATCGTAGCCGTCCGTTGTTAATATGAAAAA-CAAATTGTA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25618600224
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5