BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G23950.2
Length=2156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354376 jgi|Araly1|354376|fgenesh1_pg.C_scaffold_7001549 2213 0.0
> Ahg354376 jgi|Araly1|354376|fgenesh1_pg.C_scaffold_7001549
Length=1734
Score = 2213 bits (1198), Expect = 0.0
Identities = 1396/1491 (94%), Gaps = 16/1491 (1%)
Strand=Plus/Plus
Query 460 AGATAGAATTGGGAATTACACTGATGGATCAGTCTCAAAGACACTGAATTCCACGAGTTC 519
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 249 AGATAGAATTGGGAATTACACTGATGGATCAGTCTCAAAAACCCTGAATACCACGAGTTC 308
Query 520 TGTCTTCCCTCAGGCCACTGAGAAAGAAAACAACTTTTGTCTCCTGAGAAAAGGCCAGTT 579
|||||||||||||||| ||| |||||||||||||| |||||| |||||||| || |||||
Sbjct 309 TGTCTTCCCTCAGGCCTCTGGGAAAGAAAACAACTATTGTCTTCTGAGAAACGGTCAGTT 368
Query 580 ACAAGATGTGTATGAGCATGTTCTTGTGAACAACGCTTTGTTGATCTGCAAAGTTGTGTT 639
|||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
Sbjct 369 ACAAGATGTGTATGAGCATGTTCTTGGGAACAACGCTTTGTTGATTTGCAAAATTGTGCT 428
Query 640 GCCAGAACGAAGAATAAGCAAGAAAACTCTGGAAGCTCGTGATCCTAGATATGTCAATCT 699
|||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||
Sbjct 429 GCCAGAACGAAGAATAAGCAAGAAGACCCTGGAAGCTCGTGATCCCATATATGTCAATCT 488
Query 700 TGAAGACAAGAGTCTCAAAGTTAA----T--GGC-T--CATCACAGCTTGTGAATAATGG 750
|||||| || ||||||||||| || | ||| | |||||||||||||||||||||
Sbjct 489 TGAAGATAAAAGTCTCAAAGTAAATGGCTCGGGCTTGCCATCACAGCTTGTGAATAATGT 548
Query 751 GACTCGTTATAGGTTAGAACCAGATGGAAATGGGTATAACTACGCTTCTGCTATGAAGGG 810
||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 549 GACTCATTATAGGGTAGAACCAGATGGAACTGGGTATAACTACGCTTCTGTTATGAAAGG 608
Query 811 TGCTAAAGTTGTGGATCACAACAAGGAAGCAAAAGGAGCTAGCAATGTGCTTGGCAAAGA 870
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CGCGAAAGTTGTGGATCACAACAAGGAAGCAAAAGGAGCTAGCAATGTGCTTGGCAAAGA 668
Query 871 TCATGATAAGTATCTAAGAAATCCCTGTTCAGTGTCAGATAAGTATGTTGTGATTGAGCT 930
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 669 TCATGATAAGTATCTAAGAAACCCCTGTTCAGTGTCAGATAAGTATGTTGTGATTGAACT 728
Query 931 CGCCGAGGAGACACTGGTTGATACGGTGAGAATTGCAAATTTTGAGCATTACTCTTCGAA 990
||| |||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 729 CGCGGAGGAGACCCTGGTTGATACTGTGAGAATTGCGAATTTGGAGCACTACTCTTCGAA 788
Query 991 TCCCAAAGAGTTTAGCT-TGTCAGGGAGTCTGAGTTTCCCTAGTGATATGTGGACACCTG 1049
|||||||||||||| | |||||||||||||||||| ||| | ||||||||||||||||
Sbjct 789 TCCCAAAGAGTTTAA-TATGTCAGGGAGTCTGAGTTACCCAACCGATATGTGGACACCTG 847
Query 1050 CTGGGAGTTTTGCGGCTGCAAACGTTAAGCAGATCCAGTCATTCCGGCTCCCGGAACCTA 1109
|||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 848 CTGGGAGTTTCGTGGCTGCAAACGTTAAGCAGATCCAGACATTCCGGCTCCCGGAACCTA 907
Query 1110 AATGGTTGAGATATCTGAAACTTAATTTAGTTAGTCACTATGGGTCTGAGTTTTACTGTA 1169
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 908 AATGGTTGAGATATCTTAAACTTAATTTAGTTAGTCACTACGGGTCTGAGTTTTACTGTA 967
Query 1170 CTCTGAGTGTTGTGGAGGTATTTGGCATTGATGCTCTTGAGCAAATGCTTGAAGATCTGT 1229
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 968 CTCTGAGTGTTGTGGAGGTCTTTGGAATTGATGCTCTTGAGCAAATGCTTGAAGATCTGT 1027
Query 1230 TTGTTCCATCAGAGACTCCTCCCAGTAAACCAGCTATGGTGGAACTAAAAACTGCAGATG 1289
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1028 TTGTTCCATCAGAGACTCTTCCCAGTAAACCAGCTATGCTGGAACTAAAAACCGCAGATG 1087
Query 1290 AAAAACAAGATGGGGAAATAAAAAGCAATAGGACAGATCAGATTGGCAAAGAAACTGAAG 1349
||||| ||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1088 AAAAAGAAGTTGGGGAAGTGAAAAGCAATAGGACAGATCAGATTGGCAAGGAAACTGAAG 1147
Query 1350 CTCAGAAGAAGAAAGATGATGTTGTGAAGACGATTAATATCATAGGAGACAAAAAGTATG 1409
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1148 CTCAGAAGAAGAAAGATGATGTTGTGAAGACGATTAACATCATAGGAGACAAAAAATATG 1207
Query 1410 AAGTCAAGGAGAAGCATAACGTTTTGAAAGTGATGATGCAGAAAGTGAAATTGATTGAGA 1469
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 AAGTCAGGGAGAAGCATAACGTTTTGAAAGTGATGATGCAGAAAGTGAAATTGATTGAGA 1267
Query 1470 TGAATTTATCGCTTCTTGAGGATTCTGTAAAGAAAATGAATGACAAACAACCAGAGGTTA 1529
|||||||||||||||||||||| ||||| ||| |||||||||| || |||||||| ||||
Sbjct 1268 TGAATTTATCGCTTCTTGAGGACTCTGTGAAGGAAATGAATGAGAAGCAACCAGAAGTTA 1327
Query 1530 GCTTGGAGATGAAGAAAACCCTAGTACTTGTGGAGAAAAGCAAAGCTGACATCAGAGAGA 1589
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1328 GCTTGGAGATGAAGAAAACCCTAATACTTGTGGAGAAAAGCAAAGCTGACATCAGAGAGA 1387
Query 1590 TCACAGAATGGAAAGGGAAAATGCAGGAAAAGGAACTTAGAGACCTAGAGCTATGGAAAA 1649
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1388 TCACAGAATGGAAAGGGAAAATG--G-AAAAGGAACTTAGAGACCTAGAGCTATGGAAAA 1444
Query 1650 CTCTTGTAGCTTCCCGTGTAGAATCATTGGCTAGAGGAAACTCTGCATTGAGATTGGATG 1709
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1445 CTCTTGTAGCTTCCCGTGTAGAATCATTGGCCAGAGGAAACACTGCATTGAGATTGGATG 1504
Query 1710 TAGAGAAGATTGTGAAAGAACAAGCTAATCTAGAGAGTAAAGAGCTGGGAGTTCTATTGA 1769
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |
Sbjct 1505 TAGAGAAGATTGTGAAAGAGCAAGCAAATCTAGAGAGCAAAGAGCTGGGAGTTCTACTAA 1564
Query 1770 TAAGCCTCTTTTTCGTGGTCTTAGCAACGATTCGGTTAGTCTCAACACGACTCTGGGCAT 1829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1565 TAAGCCTCTTTTTCGTGGTCTTAGCAACGATTCGGTTAGTCTCAACACGACTCTGGACGT 1624
Query 1830 TTCTGGGGATGTCTATTACGGATAAAGCTCGATCACTATGGCCGGATAGTGGCTGGGTCA 1889
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TTATGGGGATGTCTTTTACGGATAAAGCTCGATCACTATGGCCGGATAGTGGCTGGGTCA 1684
Query 1890 TGATACTGCTAAGCAGCAGCATCATGATTTTCATTCATT-TACTCTCTTAG 1939
||||||| ||||||||||||||||||||||||||| | | |||||||||||
Sbjct 1685 TGATACTTCTAAGCAGCAGCATCATGATTTTCATT-ACTCTACTCTCTTAG 1734
Score = 333 bits (180), Expect = 3e-90
Identities = 205/216 (95%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 251 ATGGCGAGGCGCGGAA-GCTGTTCGACGATATGCCTGAATGAAAAATTGCAAAGGTTTCG 309
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGACGAGGCGCGGAATG-TGTTCGACGATATGCCTGAATGAAAAATTGCAAAGGTTCCG 59
Query 310 AATTGTCAGAATCTCCGACAAGGCTGATAATTTTAATTCCAGAAGCGGCAGCTTCTTCGA 369
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 AATTGTCAGAATCTCCGAAAAGGCTGATAATTTTAATTCAAGAAGCGGCAGCTTCTTCGA 119
Query 370 GCGTTCTATCTCTCTCGTTCTCTTACTCTGGTGCTTCCTCTTCCTCGTCTACTCCAAGCT 429
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 GCGTTCTATCTCTCTCGTTCTCTTACTCTGGTGCTTCCTTTTCCTCGTCTACTCCAAGCT 179
Query 430 TGGCCAAAGCCATGAT---GATTATGGTAATGCAGA 462
|||||||||||||||| ||||||||||||| |||
Sbjct 180 TGGCCAAAGCCATGATTATGATTATGGTAATGGAGA 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81132221850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5