BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G23960.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889767 jgi|Araly1|889767|Al_scaffold_0007_1753                    390    3e-108


> Ahg889767 jgi|Araly1|889767|Al_scaffold_0007_1753
Length=612

 Score =  390 bits (211),  Expect = 3e-108
 Identities = 305/346 (88%), Gaps = 24/346 (7%)
 Strand=Plus/Plus

Query  1    ATGATCGAGCAATTGTTTCCGGAGGTTACATGCTACGCGCTCAGATACTTAGATTACTCA  60
            |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  43   ATGATCGAACAATTGTTTCCGGAGGTTACAAGCTACGCGCTCAGATACTTGGATTACTCA  102

Query  61   AGTCTCTGCCAGTTATCAATGACGAGTTCCTCCATGAGAAAGACAGCGAATGACGATGTC  120
            |||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| |
Sbjct  103  AGTCTCTGCCAGTTATCAATGACGAGTTCCTCCATGAGAAAGGCCGCTAATAACGATGAC  162

Query  121  CTCTGGAGAGCCCTTTATTTCCAAGAATTTACAGAGGAAACAAATGGTGGAACTCCGGTT  180
            ||||||||| ||||||||| ||        | | ||||||||||||||||||| ||||||
Sbjct  163  CTCTGGAGATCCCTTTATTACC--------A-A-AGGAAACAAATGGTGGAACCCCGGTT  212

Query  181  AATGGGTGGAAGGCGTT-CTTTGCAGTTACTAAACAAGTCAT-GACTGTGAATGATAAAT  238
            ||    |    ||| || || ||||||||||||||||||||| || ||||||| || |||
Sbjct  213  AA----T----GGC-TTACTATGCAGTTACTAAACAAGTCATGGA-TGTGAATTATGAAT  262

Query  239  TCTTTAGCATCCTCGATTCGAGGTCACTTCCCAGAATGACTAGTTTATGGCTCAACTCTG  298
            ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct  263  TCTTTAGCATCCTCGATTCGAGGTCACTTCCTAGAATGACTAGTTTCTGGCTCAACTCTG  322

Query  299  ACTATGTCAAGTGCTTCAACGGC-TCTGGTGAACTCTTCACCGGGT  343
            ||||||||||||||||||||||| | ||||||||||||| ||||||
Sbjct  323  ACTATGTCAAGTGCTTCAACGGCAT-TGGTGAACTCTTCTCCGGGT  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5