BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24015.1 Length=734 Score E Sequences producing significant alignments: (Bits) Value Ahg492461 jgi|Araly1|492461|fgenesh2_kg.7__1894__AT4G24015.1 1112 0.0 > Ahg492461 jgi|Araly1|492461|fgenesh2_kg.7__1894__AT4G24015.1 Length=676 Score = 1112 bits (602), Expect = 0.0 Identities = 653/677 (96%), Gaps = 6/677 (1%) Strand=Plus/Plus Query 55 TTTTAAAGTTATGGTTGATCCTCAATCACCAATCACACCACACCTATACCCACAAGCAAT 114 |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 4 TTTTCAAGTTATGGTTGATCCTCAATCCCCAATCACACCACACCTATACCCTCAAGCAAT 63 Query 115 TCAACTTAAACTCTACCAAGCCTTCATCTTTTCCATTCCTATCTTATTCTCCATCAttct 174 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 64 TCAACTTAAACTCTACCAAGCCTTCATCTTTTCCATTCCCATCTTATTCTCCATCATTCT 123 Query 175 cttcctcttgttctatctcttttacctcaagagaagagcctcttctctctcctctccttc 234 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 124 CTTCCTCTTGTTCTATCTCTTTTACCTCAAGAGAAGAGACTCTTCTCTCTCTTCTCCTTC 183 Query 235 tccAATGATTCTTCCTGTTTCTTCGAGCCACCAGACTTCTTCGCATCTCCCCTCAGTTTG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 184 TCCAATGATTCTTCCTGTTTCTTCGAGCCACCAGACTTCTTCGCATCTCCCCTCGGTTTG 243 Query 295 TTTGTTAGATGTGAAAGTAGAGCTCAAAGACAAGCTTCATGTTGTTTTGTTCAATGAAGA 354 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 244 TTTGTTAGATGTGAAAGTAGAGCTTAAAGACAAGCTTCATGTTGTTTTGTTCAATGAAGA 303 Query 355 ACTAGGAACAAGAGATTCTCTATGTTGCGTCTGTTTGGGAGAATTCGAGTTAAAGGAAGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 ACTAGGAACAAGAGATTCTCTATGTTGCGTCTGTTTGGGAGAATTCGAGTTAAAGGAAGA 363 Query 415 GTTGGTGGAAATGCCTTTATGTAAACACATATTTCATCTCGATTGTATTCACCTTTGGCT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GTTGGTGGAAATGCCTTTATGTAAACACATATTTCATCTCGATTGTATTCACCTTTGGCT 423 Query 475 TTATTCTCACAACACTTGTCCTCTTTGTCGATCCTCTGTCTCCATCTCCTCCACCAAAAC 534 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 424 TTATTCTCACAACACTTGTCCTCTTTGTCGCTCCTCTGTTTCCATCTCCTCCACCAAAAC 483 Query 535 CTCTGTTGATGACGACAACGACCATCCAGATTCTCCTCAAACGTCACCGGTTTGATTC-A 593 |||||| | ||||||||||||||||||||||||||||||||| |||||||||||| || | Sbjct 484 CTCTGTGGGTGACGACAACGACCATCCAGATTCTCCTCAAACTTCACCGGTTTGACTCGA 543 Query 594 AACCCCCGAAGGAAATAAGCAAATACACAAGTTTTGTTAGTGAATAGATCGATACA-AGA 652 |||||| ||| ||||||||||||||| || |||||||||||||||||||||||||| | | Sbjct 544 AACCCC-GAATGAAATAAGCAAATAC-CA-GTTTTGTTAGTGAATAGATCGATACACA-A 599 Query 653 TGTAAATCTTAATTTTGCTGATACAAGATATCAAAATGTAATCCATCACATTATATATAT 712 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 600 TGTAAATCTTAATTTTGCTGATTCAAGATATCAAAATGTAATCCATCACATTATAAATAT 659 Query 713 TGGTTACACAGATTCAT 729 |||||||||| |||||| Sbjct 660 TGGTTACACAAATTCAT 676 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27029148153 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5