BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24015.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492461 jgi|Araly1|492461|fgenesh2_kg.7__1894__AT4G24015.1 1112 0.0
> Ahg492461 jgi|Araly1|492461|fgenesh2_kg.7__1894__AT4G24015.1
Length=676
Score = 1112 bits (602), Expect = 0.0
Identities = 653/677 (96%), Gaps = 6/677 (1%)
Strand=Plus/Plus
Query 55 TTTTAAAGTTATGGTTGATCCTCAATCACCAATCACACCACACCTATACCCACAAGCAAT 114
|||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 4 TTTTCAAGTTATGGTTGATCCTCAATCCCCAATCACACCACACCTATACCCTCAAGCAAT 63
Query 115 TCAACTTAAACTCTACCAAGCCTTCATCTTTTCCATTCCTATCTTATTCTCCATCAttct 174
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 64 TCAACTTAAACTCTACCAAGCCTTCATCTTTTCCATTCCCATCTTATTCTCCATCATTCT 123
Query 175 cttcctcttgttctatctcttttacctcaagagaagagcctcttctctctcctctccttc 234
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 124 CTTCCTCTTGTTCTATCTCTTTTACCTCAAGAGAAGAGACTCTTCTCTCTCTTCTCCTTC 183
Query 235 tccAATGATTCTTCCTGTTTCTTCGAGCCACCAGACTTCTTCGCATCTCCCCTCAGTTTG 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 184 TCCAATGATTCTTCCTGTTTCTTCGAGCCACCAGACTTCTTCGCATCTCCCCTCGGTTTG 243
Query 295 TTTGTTAGATGTGAAAGTAGAGCTCAAAGACAAGCTTCATGTTGTTTTGTTCAATGAAGA 354
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 244 TTTGTTAGATGTGAAAGTAGAGCTTAAAGACAAGCTTCATGTTGTTTTGTTCAATGAAGA 303
Query 355 ACTAGGAACAAGAGATTCTCTATGTTGCGTCTGTTTGGGAGAATTCGAGTTAAAGGAAGA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACTAGGAACAAGAGATTCTCTATGTTGCGTCTGTTTGGGAGAATTCGAGTTAAAGGAAGA 363
Query 415 GTTGGTGGAAATGCCTTTATGTAAACACATATTTCATCTCGATTGTATTCACCTTTGGCT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GTTGGTGGAAATGCCTTTATGTAAACACATATTTCATCTCGATTGTATTCACCTTTGGCT 423
Query 475 TTATTCTCACAACACTTGTCCTCTTTGTCGATCCTCTGTCTCCATCTCCTCCACCAAAAC 534
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 424 TTATTCTCACAACACTTGTCCTCTTTGTCGCTCCTCTGTTTCCATCTCCTCCACCAAAAC 483
Query 535 CTCTGTTGATGACGACAACGACCATCCAGATTCTCCTCAAACGTCACCGGTTTGATTC-A 593
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 484 CTCTGTGGGTGACGACAACGACCATCCAGATTCTCCTCAAACTTCACCGGTTTGACTCGA 543
Query 594 AACCCCCGAAGGAAATAAGCAAATACACAAGTTTTGTTAGTGAATAGATCGATACA-AGA 652
|||||| ||| ||||||||||||||| || |||||||||||||||||||||||||| | |
Sbjct 544 AACCCC-GAATGAAATAAGCAAATAC-CA-GTTTTGTTAGTGAATAGATCGATACACA-A 599
Query 653 TGTAAATCTTAATTTTGCTGATACAAGATATCAAAATGTAATCCATCACATTATATATAT 712
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 600 TGTAAATCTTAATTTTGCTGATTCAAGATATCAAAATGTAATCCATCACATTATAAATAT 659
Query 713 TGGTTACACAGATTCAT 729
|||||||||| ||||||
Sbjct 660 TGGTTACACAAATTCAT 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5