BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24020.1
Length=3203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492460 jgi|Araly1|492460|fgenesh2_kg.7__1893__AT4G24020.1 5121 0.0
Ahg352841 jgi|Araly1|352841|fgenesh1_pg.C_scaffold_7000014 76.8 9e-13
> Ahg492460 jgi|Araly1|492460|fgenesh2_kg.7__1893__AT4G24020.1
Length=3184
Score = 5121 bits (2773), Expect = 0.0
Identities = 3065/3202 (96%), Gaps = 36/3202 (1%)
Strand=Plus/Plus
Query 10 ACACACTCTGCCAATTTGACCTTTCTCTCTCGCTTCTCTTTCTCTATCCAATCGGAAA-G 68
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1 ACACACACTGCCAAATTGACCTTTCTCTCTCGCTTCTCTTTCTCTATCCAATC-GAAACG 59
Query 69 AGATCAACCAACGATAGAGGAGAAGAAGAACTTGCATACGC-aaa-aaaaCTTTCCCGGG 126
||||||| | | | | | ||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 60 AGATCAA-C--C-A-A-A-GAG-AGAAGAACTTGCATACGCTAAATAAAACTTTCCCGGG 111
Query 127 AAAATTCCAGAAACTGCTTTGGA-AAAATGTGCGAGCCCGATGATAATTCCGCTAGAAAC 185
|||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct 112 AAAATTCCAGAAACTGCTTT-GACAAAATGTGCGAGCCCGATGATCATTCCGCTAGAAAC 170
Query 186 GGCGTCACTACTCAACCTTCGAGGTCAAGGGAGCTTCTAATGGATGTTGACGACTTAGAT 245
|| |||||||||| ||| ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 171 GGTGTCACTACTCCACCGTCGAGGTCAAGAGAGCTTTTGATGGATGTTGACGACTTAGAT 230
Query 246 CTTGACGGTTCATGGCCACTAGATCAAATCCCTTACTTATCCTCATCGAATCGCATGATT 305
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 231 CTCGACGGTTCATGGCCACTAGATCAAATCCCTTACTTATCCTCATCGAATCGGATGATT 290
Query 306 TCTCCGATTTTTGTCTCCTCTTCCTCTGAGCAGCCTTGCTCGCCTCTCTGGGCTTTCTCC 365
||||||| ||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 291 TCTCCGAATTTTGTCTCGTCTTCCTCAGAGCAGCCTTGTTCACCTCTCTGGGCTTTCTCC 350
Query 366 GACGGTGGAGGAAATGGTTTTCACCACGCAACCTCCGGTGGCGATGATGAGAAGATCAGC 425
||||||||||| || |||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 351 GACGGTGGAGGCAACGGTTTTCACCACGCAACCTCCGGTGGTGACGATGAGAAAATCAGC 410
Query 426 TCTGTCTCCGGTGTTCCTTCTTTCCGTCTCGCCGAGTATCCTCTCTTCCTCCCTTACTCT 485
|| | ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 411 TCCGCCTCTGGTGTTCCTTCTTTCCGTCTCGCCGAGTATCCAATCTTTCTCCCTTACTCT 470
Query 486 TCTCCATCAGCAGCTGAGAACACAACAGAGAAGCATAACAGTTTCCAGTTTCCGTCTCCA 545
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 471 TCTCCACCAGCAGCTGAGAACTCAACAGAGAAGAATAACAGTTTCCAGTTTCCTTCTCCA 530
Query 546 TTGATGAGCCTAGTCCCACCAGAGAACACAGACAACTACTGTGTGATCAAAGAGAGGATG 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGATGAGCCTAGTCCCACCAGAGAACACAGACAACTACTGTGTGATCAAAGAGAGGATG 590
Query 606 ACTCAGGCGCTTCGATACTTCAAAGAATCAACCGAACAACACGTTTTGGCTCAGGTCTGG 665
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 591 ACTCAGGCGCTTCGATACTTCAAAGAATCAACAGAACAAAACGTTTTGGCTCAGGTCTGG 650
Query 666 GCTCCTGTGAGAAAGAATGGTCGTGATTTGCTGACGACTTTGGGTCAACCTTTTGTTCTT 725
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 651 GCTCCTGTGAGAAAGAATGGTCGTAATTTGCTGACGACTTTGGGTCAACCTTTTGTTCTT 710
Query 726 AATCCTAATGGTAATGGGCTTAATCAATACAGGATGATCTCTCTCACATATATGTTTTCT 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AATCCTAATGGTAATGGGCTTAATCAATACAGGATGATCTCTCTCACATATATGTTTTCT 770
Query 786 GTGGATAGTGAAAGTGACGTAGAGCTCGGACTCCCGGGTCGAGTTTTCCGTCAGAAATTG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GTGGATAGTGAAAGTGACGTAGAGCTCGGACTCCCGGGTCGAGTTTTCCGTCAGAAATTG 830
Query 846 CCTGAATGGACTCCAAATGTTCAGTACTATTCCAGCAAAGAATTCTCGCGGCTTGATCAC 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CCTGAATGGACTCCAAATGTTCAGTACTATTCCAGCAAAGAATTCTCGCGGCTTGATCAC 890
Query 906 GCCTTGCACTACAACGTGCGTGGTACACTGGCCTTGCCTGTCTTTAATCCCTCTGGTCAG 965
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 891 GCCTTACACTACAACGTGCGTGGTACACTGGCCTTGCCTGTATTTAATCCCTCGGGTCAG 950
Query 966 TCCTGCATAGGTGTTGTGGAACTTATAATGACCTCAGAGAAGATTCACTATGCACCCGAA 1025
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TCCTGCATTGGTGTTGTGGAACTTATAATGACCTCAGAGAAGATTCACTATGCACCCGAA 1010
Query 1026 GTGGACAAAGTTTGCAAAGCCCTTGAGGCGGTAAATCTGAAAAGCTCGGAAATACTTGAT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GTGGACAAAGTTTGCAAAGCCCTTGAGGCGGTAAATCTGAAAAGCTCGGAAATACTTGAT 1070
Query 1086 CACCAAACAACACAGATATGCAATGAGAGTCGCCAAAACGCGCTTGCTGAGATTCTCGAA 1145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1071 CACCAAACAACACAGATATGCAATGAGAGTCGCCAAAACGCGCTTGCTGAGATTCTGGAA 1130
Query 1146 GTGCTGACAGTTGTATGTGAGACCCATAACTTGCCTCTCGCTCAGACTTGGGTTCCATGT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 GTGCTGACAGTTGTATGTGAGACCCATAACTTGCCTCTCGCTCAGACTTGGGTTCCATGT 1190
Query 1206 CAGCATGGGAGCGTTCTTGCCAATGGTGGCGGTCTAAAGAAAAACTGCACCAGCTTTGAC 1265
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CAGCACGGGAGCGTTCTTGCCAATGGTGGCGGTCTAAAGAAAAACTGCACCAGCTTTGAC 1250
Query 1266 GGTAGCTGCATGGGTCAAATCTGCATGTCTACAACCGACATGGCCTGCTATGTCGTGGAT 1325
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1251 GGTAGCTGCATGGGCCAAATCTGCATGTCTACAACCGACATGGCCTGCTATGTTGTGGAT 1310
Query 1326 GCTCATGTCTGGGGCTTTAGAGATGCCTGTCTTGAACACCATCTCCAGAAAGGCCAGGGA 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1311 GCTCATGTCTGGGGCTTTAGAGATGCCTGTCTTGAACACCATCTCCAGAAAGGACAGGGA 1370
Query 1386 GTCGCTGGACGAGCTTTTCTCAATGGTGGCTCATGTTTCTGCAGAGACATCACCAAGTTC 1445
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1371 GTCGCTGGACGAGCTTTTCTCAATGGTGGCTCGTGTTTCTGCAGAGACATCACCAAGTTC 1430
Query 1446 TGCAAAACGCAGTACCCACTAGTCCATTATGCGCTCATGTTCAAGTTGACCACTTGTTTT 1505
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1431 TGCAAAACGCAGTACCCACTGGTCCATTATGCGCTCATGTTCAAGTTAACCACTTGTTTC 1490
Query 1506 GCAATATCTCTCCAGAGCTCTTACACGGGCGACGACAGTTACATTCTTGAATTTTTTCTT 1565
||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1491 GCAATCTCTCTCCAGAGCTCTTACACGGGTGACGACAGTTACATTCTTGAGTTCTTTCTT 1550
Query 1566 CCTTCGAGTATAACAGACGACCAAGAGCAAGATTTGCTGTTGGGTTCTATTTTGGTGACA 1625
|| || |||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1551 CCGTCAAGTATAACAGACGACCAAGAGCAAGATTCGTTGTTGGGTTCTATTTTGGTGACA 1610
Query 1626 ATGAAAGAACATTTTCAGAGTCTGAGGGTTGCATCTGGGGTTGACTTTGGTGAAGATGAC 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ATGAAAGAACATTTTCAGAGTCTGAGGGTTGCATCTGGGGTTGACTTTGGTGAAGATGAC 1670
Query 1686 GACAAATTGTCTTTCGAGATCATCCAAGCATTACCGGACAAGAAGGTTCATTCAAAAATA 1745
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1671 GACAAATTGTCTTTCGAGATCATCCAAGCATTACCAGACAAGAAGGTTCATTCAAAAATA 1730
Query 1746 GAATCCATTCGAGTTCCCTTTTCTGGTTTTAAGTCAAATGCAACAGAGACGATGTTGATT 1805
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1731 GAATCCATTCGAGTTCCCTTTTCTGGTTTTAAGTCAAACGCGGCAGAGACGCTGTTGATT 1790
Query 1806 CCTCAGCCTGTGGTTCAGTCTTCTGATCCAGTAAATGAGAAAATCAACGTGGCCACTGTT 1865
|||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||| ||||
Sbjct 1791 CCTCAGCCTGCGGTTCAGTCTTCTGAACCAGTAAACGAGAAAATCAATGTGGCCATTGTT 1850
Query 1866 AACGGTGTGGTTAAGGAGAAGAAGAAAACAGAGAAAAAGCGTGGGAAGACTGAGAAAACA 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AACGGTGTGGTTAAGGAGAAGAAGAAAACAGAGAAAAAGCGTGGGAAGACTGAGAAAACA 1910
Query 1926 ATCAGTCTAGATGTACTTCAGCAGTATTTCACTGGAAGTCTCAAAGACGCTGCAAAGAGC 1985
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 ATCAGTCTGGATGTACTTCAGCAGTATTTCACTGGAAGTCTCAAAGACGCTGCAAAGAGC 1970
Query 1986 CTAGGAGTTTGCCCGACGACAATGAAGCGAATTTGCAGGCAACACGGAATCTCGCGGTGG 2045
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1971 CTTGGAGTTTGCCCGACGACAATGAAGCGAATTTGCAGACAACACGGAATCTCGCGGTGG 2030
Query 2046 CCATCGAGGAAGATCAAGAAAGTGAATCGTTCAATCACAAAGCTGAAACGAGTCATCGAA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 CCATCGAGGAAGATCAAGAAAGTGAATCGTTCAATCACAAAGCTGAAACGAGTCATCGAA 2090
Query 2106 TCTGTTCAAGGTACTGATGGAGGCCTCGACCTGACTTCCATGGCCGTTAGTTCCATCCCT 2165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TCTGTTCAAGGTACTGATGGAGGCCTCGACCTGACTTCCATGGCCGTTAGTTCCATCCCT 2150
Query 2166 TGGACACACGGTCAAACATCAGCACAGCCACTAAACTCACCCAATGGTTCCAAACCACCT 2225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 TGGACACACGGTCAAACATCAGCACAGCCACTAAACTCACCCAATGGTTCCAAACCACCC 2210
Query 2226 GAGCTACCAAACACCAATAATTCACCTAACCATTGGTCAAGTGATCACAGTCCGAACGAG 2285
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2211 GAGCTACCAAACACCAATAATTCACCTAACCACTGGTCAAGTGATCACAGTCCGAACGAG 2270
Query 2286 CCAAATGGTTCGCCTGAGTTACCACCAAGCAATGGTCACAAGCGATCACGAACGGTGGAT 2345
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2271 CCAAATGGTTCGCCCGAGTTACCACCAAGCAACGGTCACAAGCGATCACGAACGGTAGAT 2330
Query 2346 GAGAGCGCTGGGACTCCAACCTCTCATGGCTCATGTGACGGTAACCAATTAGATGAACCG 2405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 GAGAGCGCTGGGACTCCAACCTCTCATGGCTCATGTGACGGTAACCAATTAGATGAACCG 2390
Query 2406 AAAGTCCCAAATCAAGATCCGCTCTTCACGGTTGGTGGATCACCCGGGCTCCTTTTTCCA 2465
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2391 AAAGTCCCAAATCAAGATTCGCTATTCACGGTTGGTGGATCACCCGGGCTCCTTTTTCCA 2450
Query 2466 CCTTATTCTAGAGATCATGATGTATCTGCAGCTTCCTTCGCAATGCCGAACAGGCTTCTT 2525
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 2451 CCTTATTCTAGAGATCATGATGTAACTGCAGCTTCATTCGCAATGCCGAACAGGCTTCTT 2510
Query 2526 GGTTCTATAGACCATTTCCGAGGAATGCTCATTGAAGACGCTGGAAGTTCAAAAGATCTG 2585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2511 GGTTCTATAGACCATTTCCGAGGAATGCTCATTGAAGACGCTGGAAGTTCAAAAGATCTG 2570
Query 2586 AGAAATCTCTGCCCCACTGCAGCATTTGACGATAAGTTTCAAGACACAAACTGGATGAAC 2645
|||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 2571 AGAAATCTCTGCTCCACTTCAGCATTTGACGATAAGTTTCCAGACTCAAACTGGATGAAC 2630
Query 2646 AATGATAATAATAGCAACAACAACTTATACGCTCCCCCAAAGGAAGAGGCCATTGCAAAT 2705
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2631 AATGATAATAACAGCAACAAC---TTATACGCTCCCCCAAAGGAAGAGGCCATTGCAAAT 2687
Query 2706 GTTGCATGCGAACCATCAGGCTCAGAAATGAGAACGGTAACAATCAAAGCAAGTTACAAA 2765
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2688 GTTGCACGCGAACCATCAGGCTTAGAAATGAGAACGGTAACAATCAAAGCAAGTTACAAA 2747
Query 2766 GACGACATAATACGGTTCAGAATATCCTCGGGTTCAGGTATAATGGAATTGAAGGATGAA 2825
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2748 GAAGACATAATACGGTTCAGAATATCCTCGGGTTCGGGTATAATGGAGTTGAAGGATGAA 2807
Query 2826 GTGGCTAAGAGGCTGAAAGTTGATGCAGGAACGTTCGATATCAAGTATCTTGACGATGAT 2885
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2808 GTGGCGAAGAGGCTGAAACTTGATGCAGGAACGTTCGATATCAAGTATCTTGACGATGAT 2867
Query 2886 AACGAATGGGTTTTAATAGCTTGTGATGCTGATCTTCAAGAATGTCTCGAGATCCCTAGA 2945
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2868 AACGAATGGGTTTTGATAGCTTGTGATGCTGATCTTCAAGAATGTCTAGAGATCCCTAGA 2927
Query 2946 TCCTCCCGCACGAAAATCGTAAGGCTCTTAGTTCATGATGTAACGACAAATCTAGGGAGC 3005
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2928 TCCTCCCGCACGAAAATCGTAAGGCTCTTAGTTCATGATGTAACGACAAATCTCGGGAGC 2987
Query 3006 TCCTGCGAGAGCACTGGAGAATTGTGACCTGA--TAATTCATTCGAACT-C----T-TTT 3057
|| ||||||||||| ||||||||||||||||| ||||||||||||| | | | |||
Sbjct 2988 TCTTGCGAGAGCACCGGAGAATTGTGACCTGAGGTAATTCATTCGAAGTTCGAACTATTT 3047
Query 3058 -GTAAATA-TGTTTTTTGAATTTTATTATTGTTTAGGGTTTCTTTGGACAAATTAAAGTT 3115
||||||| | ||||||||||||||||| ||||||||| || |||||||||| |||
Sbjct 3048 TGTAAATAAT-TTTTTTGAATTTTATTACTGTTTAGGGATTGTTTGGACAAA-----GTT 3101
Query 3116 GTAA-AAGAAACATTTGTTTGTAACTTTTAACTGTAAAAGTGTAagagagagag--agGT 3172
|||| || ||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 3102 GTAAGAAAAAACATTTGTTTGTAACTTTTAACTGTAAGAGTGTAAGAGGGAGAGTGAGGT 3161
Query 3173 TAGAAGTAAATTTTAGTTGTAA 3194
||||||||||||||||||||||
Sbjct 3162 TAGAAGTAAATTTTAGTTGTAA 3183
> Ahg352841 jgi|Araly1|352841|fgenesh1_pg.C_scaffold_7000014
Length=2082
Score = 76.8 bits (41), Expect = 9e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 2019 TGCAGGCAACACGGAATCTCGCGGTGGCCATCGAGGAAGATCAAGAAAGT 2068
||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1369 TGCAGACAACACGGAATCTCAAGGTGGCCATCGAGGAAGATCAAGAAAGT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121012708365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5