BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24026.1
Length=513
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492459 jgi|Araly1|492459|fgenesh2_kg.7__1892__AT4G24030.1 324 4e-88
> Ahg492459 jgi|Araly1|492459|fgenesh2_kg.7__1892__AT4G24030.1
Length=288
Score = 324 bits (175), Expect = 4e-88
Identities = 203/216 (94%), Gaps = 3/216 (1%)
Strand=Plus/Minus
Query 79 AAAAGCATCAGCATCACCTCCAACGTTAGCACGACGACTTCCATGGAAAAGATCGACCAC 138
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 216 AAAAGCATCAGCATCACCTCCAACGTTAGCACGACGACTTCCATGGAGAAGATCGACCAC 157
Query 139 GCCGCTAGCTGGATCAGCGCAACCGTAATATCCGCTTTCTTCACCTCCCTCGAACGCTGC 198
||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| |||
Sbjct 156 GCCGCGAGCTGGATCAGCGCCACCGTCATCTCCGCTTTCTTCACCTCCCTCGAACGTTGC 97
Query 199 GCCTGCGTCAATCTCTCCACCTCTCATgacgacgacgacgacgacgacgacga--A-TCC 255
||||||||||||||||||||||||||||| || || ||||||||||||||||| | |||
Sbjct 96 GCCTGCGTCAATCTCTCCACCTCTCATGATGATGAAGACGACGACGACGACGACGAGTCC 37
Query 256 CATCACCGTCCTCTCGCTCTCTCCGCCGCTCCTCAT 291
|||||||||||||| |||||||||||||||||||||
Sbjct 36 CATCACCGTCCTCTGGCTCTCTCCGCCGCTCCTCAT 1
Score = 73.1 bits (39), Expect = 2e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 1 GTAATATATTGATCCATCCCACGATCTTCTTTTCTTGGTCGTCTT 45
|||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 261 GTAAGAGATTGATCCATCCCACGATCTTCTTTTCTTGGTCGTCTT 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18658083021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5