BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24040.1
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945701 jgi|Araly1|945701|scaffold_701930.1 2789 0.0
> Ahg945701 jgi|Araly1|945701|scaffold_701930.1
Length=1927
Score = 2789 bits (1510), Expect = 0.0
Identities = 1799/1937 (93%), Gaps = 25/1937 (1%)
Strand=Plus/Plus
Query 39 TCAGAATTCAAACATTTGGCAATGAAATCATACAAACTTAATAACCCTAATTTACTCATC 98
||| |||||||||||||||||||||||||| |||||| ||| ||||||||| |||| |||
Sbjct 1 TCA-AATTCAAACATTTGGCAATGAAATCACACAAACATAACAACCCTAATCTACTAATC 59
Query 99 TCCACGCACACACATAATAAACTCTTCTTATCCTCTTCTCCATTCAATCTCTTAttctct 158
|||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 60 TCCACGCATACAC---ATAAACTCTTCTTATCCTCTTCTCCATTCAATTTCTTAATCTCT 116
Query 159 tttccttccttcatataccttaaacagcaacg--t---t-ctctgttcttcttcttcttt 212
|||||||||| ||||||||||| |||||||| | | |||||||||||||||||||
Sbjct 117 CTTCCTTCCTTTATATACCTTAAGCAGCAACGTTTCACTCCTCTGTTCTTCTTCTTCTTC 176
Query 213 ttcttcctctgtttttctttcACAACTTCCATGTTGGACTCGGACACAGACACGGACTCA 272
|||||||||||||| ||||| || ||||||||| ||| ||||||||||||||||||||||
Sbjct 177 TTCTTCCTCTGTTTCTCTTTGACTACTTCCATGGTGGCCTCGGACACAGACACGGACTCA 236
Query 273 GGTCCTGTGGTTGCAACAACCAAACTCGTCACTTTCCTCCAGCGTGTGCAGCACACGGCA 332
|||||||||||| ||||||| ||||||||||||||||||||| || |||| |||||||
Sbjct 237 GGTCCTGTGGTTCCAACAACTGCACTCGTCACTTTCCTCCAGCGGGTCCAGCTCACGGCA 296
Query 333 CTTCGATCATACCCTAAAAAACAAA-CGCCTGATCCCAAATCCTACATTGATCTATCTCT 391
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 297 CTTCGATCATACCCTAAAAAACAAATC-CCTGATCCCAAATCCTACATTGATCTATCTCT 355
Query 392 CAAACGTCCCTACAGTCTCTCCACCATCGAATCAGCCTTCGATGATCTCACGAGCGAGT- 450
|||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 356 CAAACGTCCCTACAATCTCTCCACCATTGAATCAGCCTTCAACGATCTCACGAGCGAGTC 415
Query 451 -CA-CATGACCAGCCAGTGCCAGTGGAGACGCTTGAAAAGTTCGTCAAGGAATATTTTGA 508
|| ||||||||| ||||||||||||||| ||||||||||||||| ||| |||| || ||
Sbjct 416 ACATCATGACCAGTCAGTGCCAGTGGAGAAGCTTGAAAAGTTCGTTAAGAAATACTTCGA 475
Query 509 CGGTGCAGGGGAGGATCTGCTGCACCACGAACCAGTAGATTTCGTCTCAGATCCCTCCGG 568
||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 476 CGGCGCAGGAGAGGATCTGCTGCACCACGAACCAGTGGATTTCTTCTCAGATCCCTCCGG 535
Query 569 CTTCCTCTCCAACGTGGAGAACGAAGAAGTCAGAGAATGGGCGCGTGAGGTACACGGTCT 628
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 536 CTTCCTCTCCAACGTGGAGAACGAACAAGTCAGAGAATGGGCGCGTGAGGTACACGGCCT 595
Query 629 TTGGAG-AAATCTGAGCTGCAGAGTCTCTGACTCAGTAAGAGAGTCTGC-CGACCGGCAC 686
||||| || | ||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 596 CTGGAGTAACT-TGAGCTGCAGAGTCTCTGACTCAGTAATAGAGTCT-CATGACCGGCAC 653
Query 687 ACGCTTCTACCGTTGCCGGAACCGGTTATCATTCCCGGTTCGAGATTCAGAGAAGTCTAT 746
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 654 ACGCTTCTGCCGTTGCCGGAACCGGTTATTATTCCCGGTTCGAGATTCAGAGAAGTTTAC 713
Query 747 TACTGGGATTCTTATTGGGTCATCAAAGGACTTATGACGAGTCAAATGTTCACTACCGCC 806
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 714 TACTGGGATTCTTATTGGGTCATCAAAGGACTTATGACGAGTAAAATGTTCACTACCGCC 773
Query 807 AAAGGTTTAGTGACGAATCTGATGTCACTTGTGGAGACTTATGGTTACGCTTTGAACGGT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAAGGTTTAGTGACGAATCTGATGTCACTTGTGGAGACTTATGGTTACGCTTTGAACGGT 833
Query 867 GCTAGAGCTTATTATACTAACAGAAGCCAACCACCTTTGTTGAGCTCCATGGTCTATGAA 926
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 834 GCTAGAGCTTATTACACTAACAGAAGCCAACCACCTTTGTTGAGCTCAATGGTCTATGAG 893
Query 927 ATTTATAATGTGACAAAAGATGAAGAACTTGTGAGGAAAGCAATCCCTCTGCTTCTCAAA 986
||||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 894 ATTTATAATGTAACCAAAGATGAAGAACTTGTGAGGAAAGCAATCCCTGTACTTCTCAAA 953
Query 987 GAGTACGAGTTTTGGAACTCAGGAAAACATAAAGTGGTTATTCGAGACGCTAATGGTTAT 1046
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 GAGTACAAGTTTTGGAACTCAGGAAAACATAAAGTGGTTATTCGAGATGCTAATGGTTAT 1013
Query 1047 GATCACGTTTTGAGCCGTTATTATGCTATGTGGAACAAGCCAAGGCCTGAATCCTCTGTT 1106
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1014 GATCATGTTTTAAGCCGTTATTATGCTATGTGGAACATGCCAAGGCCTGAATCCTCTGTT 1073
Query 1107 TTCGATGAAGAATCTGCTTCAGGGTTCTCGACTATGTTAGAGAAACAACGGTTCCATCGA 1166
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTCGATGAAGAATCCGCTTCAGGGTTCTCGACTATGTTAGAGAAACAACGGTTCCATCGA 1133
Query 1167 GATATAGCCACGGCTGCTGAATCAGGATGCGATTTCAGCACGCGATGGATGAGGGATCCT 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GATATAGCCACGGCTGCTGAATCAGGATGCGATTTCAGCACGCGATGGATGAGGGATCCT 1193
Query 1227 CCTAATTTCACAACGATGGCTACAACATCAGTGGTTCCTGTTGATCTAAATGTTTTTCTT 1286
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1194 CCTAACTTCACAACGATGGCTACAACATCAGTTGTACCTGTTGATCTAAATGTTTTTCTT 1253
Query 1287 CTCAAGATGGAACTCGATATAGCGTTCATGATGAAGGTTTCTGGAGATCAAAATGGTTCA 1346
||||||||||||||||||||||| |||||||||||| |||| || ||| |||| ||||||
Sbjct 1254 CTCAAGATGGAACTCGATATAGCATTCATGATGAAGATTTCCGGGGATAAAAAAGGTTCA 1313
Query 1347 GACCGTTTTGTGAAAGCGTCAAAAGCGAGAGAGAAAGCGTTTCAAACCGTGTTTTGGAAC 1406
| ||||||| |||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1314 GGCCGTTTTTTGAAAGCGTCAAAAGCGAGAGAGAAAGCGTTTGAAGCTGTGTTTTGGAAT 1373
Query 1407 GAGAAAGCAGGGCAATGGCTGGATTACTGGCTTTCCTCCAGTGGTGAGGAATCTGAGACA 1466
||||||||||| |||||||| |||||||||||||| || | |||||| || ||||||||
Sbjct 1374 GAGAAAGCAGGACAATGGCTAGATTACTGGCTTTCATCGAATGGTGATGAGCCTGAGACA 1433
Query 1467 TGGAAGGCTGAGAACCAAAACACCAACGTCTTTGCGTCTAACTTTGCACCAATCTGGATT 1526
||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1434 TGGAAAGCTGAGAACCAGAACACCAATGTTTTTGCGTCTAACTTTGCTCCAATCTGGATT 1493
Query 1527 AATTCCATCAATTCAGATGAAAATCTTGTCAAGAAAGTTGTGACAGCTCTTAAGAACTCA 1586
|||||| |||||||||||||| ||||||||||||||| |||| ||||||||| ||||||
Sbjct 1494 AATTCCTTCAATTCAGATGAAGTTCTTGTCAAGAAAGTCGTGAAAGCTCTTAAAAACTCA 1553
Query 1587 GGGCTCATTGCTCCCGCTGGAATCCTAACTTCTTTGACAAACTCAGGACAACAATGGGAT 1646
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1554 GGGCTCATTGCTCCCGCTGGAATCCTAACCTCTTTGACAAATTCGGGACAACAATGGGAT 1613
Query 1647 TCTCCGAATGGATGGGCACCGCAACAAGAGATGATCGTCACAGGGCTCG-GAAGATCGAG 1705
||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||
Sbjct 1614 TCTCCGAATGGATGGGCACCGCAACAAGATATGATCGTTACAGGGCTCGCGA-GATCGAG 1672
Query 1706 TGTAAAAG-AAGCTAAAGAGATGGCAGAGGATATTGCAAGGAGATGGATCAAAAGCAACT 1764
| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 T-TCAAAGGAAGCTAAAGAGATGGCAGAGGATATTGCAAGGAGATGGATCAAAAGCAACT 1731
Query 1765 ATCTTGTCTACAAGAAAAGTGGGACTATACATGAGAAGCTCAAAGTTACAGAGCTTGGTG 1824
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1732 ATCTTGTTTACAAGAAAAGTGGGACTATCCATGAGAAGCTCAAAGTTACAGAGCTTGGTG 1791
Query 1825 AATATGGTGGTGGAGGAGAATATATGCCACAGACCGGATTCGGATGGTCAAATGGAGTTA 1884
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1792 AATATGGTGGTGGTGGAGAATATATGCCACAGACTGGATTCGGATGGTCAAATGGAGTTA 1851
Query 1885 TCTTAGCATTCTTGGAGGAATATGGATGGCCCTCTCATCTTAGCATTGAAGCCTAGATTT 1944
| ||||||||||||||||||| ||||||||||||||| || | ||||||| |||||||||
Sbjct 1852 TATTAGCATTCTTGGAGGAATTTGGATGGCCCTCTCACCTCAACATTGAATCCTAGATTT 1911
Query 1945 ACTAAGT-TTATTGAAA 1960
||||| | ||||| |||
Sbjct 1912 ACTAATTCTTATT-AAA 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79570521805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5