BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24050.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492457 jgi|Araly1|492457|fgenesh2_kg.7__1890__AT4G24050.1 2307 0.0
> Ahg492457 jgi|Araly1|492457|fgenesh2_kg.7__1890__AT4G24050.1
Length=1688
Score = 2307 bits (1249), Expect = 0.0
Identities = 1526/1652 (92%), Gaps = 49/1652 (3%)
Strand=Plus/Plus
Query 1 GCCAGGCGGCGTTGCCTACAAAAACCTGACAATCGAAACACAGTTTTTCTGATAATAATA 60
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 GCCAGGCGGCGTTGCCTACAAAAACTTGACAAGAGAAACACAGTTTTTCTGATAATAATA 60
Query 61 -TAGACATTTACCATTATGCCCTTCTAACTGAAAACGGCAATTACgttccttgttatttg 119
| | |||||||||||| |||||||||| |||||||||||||||||||||| |||||||
Sbjct 61 CTTTA-ATTTACCATTATACCCTTCTAACCGAAAACGGCAATTACGTTCCTTCTTATTTG 119
Query 120 ttttcttccttc-tc--cttctgtttct-tttttgtggctttaatttttttcATATTAAT 175
|||||||||||| || ||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 120 TTTTCTTCCTTCTTCTTCTTCTGTTT-TATTTTTGTGGCTTTAATTTTTTTCATATTTAT 178
Query 176 TCGGAAAGAGAAAGACTCTTCACTCCCATAACAGTCGCCGGTAACAGAATC--ACTCCGA 233
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 179 TCGGAAAGAGAAAGACTCTTCACTCACATAACAGTCGCCGGTAACAGAA-CAAACTCCGA 237
Query 234 TGATCGAGACTGGTAAATACCTTCTCGGCGCCGCCGGTGCTAGCGGTTTCGGCTCTAAAT 293
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 TGATTGAGACTGGAAAATACCTTCTCGGCGCCGCCGGTGCTAGCGGCTTCGGCTCTAAAT 297
Query 294 CCACCGCCGAGGAAGTTACCGAGAACTGCGACCTTCGTTCCATCACAGCGGTTATCACCG 353
| |||||||| || ||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 298 CTACCGCCGAAGAGGTTACCGAGAACTGCGACCTTCGTTCCGTCACAGTGATAATCACCG 357
Query 354 GTGCGACGTCGGGGATCGGAGCGGAGACGGCGAGAGTTCTGGCGAAACGAGGAGCGAGGT 413
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 358 GTGCGACGTCGGGGATCGGAGCAGAGACGGCGAGAGTGCTGGCGAAACGAGGAGCGAGGT 417
Query 414 TGATTTTTCCGGCGAGGAATGTGAAAGCAGCGGAGGAAGCAAAAGAGAGAATCGTTTCTG 473
||||||| ||||||||||| |||||||| ||||||||||| ||||||||||| || ||||
Sbjct 418 TGATTTTCCCGGCGAGGAACGTGAAAGCGGCGGAGGAAGCGAAAGAGAGAATTGTCTCTG 477
Query 474 AGTTTCCGGAGACAGAGATCGTCGTTATGAAGCTTGATCTTAGTTCTATCGCCTCCGTAC 533
||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 478 AGTTTCCGGAGACAGAGATCGTCGTTATGGAGCTTGATCTCAGTTCCATCGCCTCCGTAC 537
Query 534 GAAACTTCGTCGCCGATTTCGAGTCTCTTGATCTTCCTCTTAACCTTCTCATAAACAACG 593
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 GAAACTTCGTCGCCGATTTCGAGTCTCTTGATCTTCCTCTTAATCTTCTCATAAACAACG 597
Query 594 CAGGCAAGTTAGCACATGAACATGCAATATCTGAAGACGGGATCGAGATGACATTTGCTA 653
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 598 CAGGCAAGTTAGCACATGAACATGCAATATCCGAAGACGGGATCGAGATGACATTTGCCA 657
Query 654 CTAATTATCTAGGCCATTTTCTCTTGACCAATCTTTTGCTAAACAAGATGATTCAAACGG 713
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 658 CTAATTACCTAGGCCATTTTCTCTTGACAAATCTTTTGCTAAAGAAGATGATTCAAACGG 717
Query 714 CAGAGGAAACAGGAGTTCAAGGACGTATCGTTAACGTTACGTCCGGTATTCACGGATGGT 773
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 718 CAGAGGAAACAGGAGTTCAAGGACGTATCGTTAACGTTACGTCGGGTATTCACGGCTGGT 777
Query 774 TCTCCGGCGACTTGATCGAATATCTCCGACTCATTTCACAACCCAAGTGTCAATTCGATG 833
| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 778 TTTCCGGTGACTTGATCGAATATCTCCGGCTGATTTCACAACCCAAGTGTCAATTCGATG 837
Query 834 CGACACGTGCGTATGCTCTCTCGAAGCTTGCCAACGTTTTGCATACCAAGGAGCTCTCTT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CGACACGTGCGTATGCTCTCTCGAAGCTTGCCAACGTTTTGCATACCAAGGAGCTCTCTT 897
Query 894 CTAGACTCCAGAAAATTGGAGCGAATGTTACGGTAAATTGCGTACACCCAGGAGTTGTTA 953
|||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||
Sbjct 898 CTAGACTCCAGAAAATTGAAGCCAACGTGACGGTAAATTGCGTACACCCAGGAGTTGTTA 957
Query 954 GAACCCGGTTAACAAGAGACCGAGAAGGTCTATTGACAGATCTCGTCTTCTTCCTGGCTT 1013
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 GAACCCGGTTAACAAGAGACCGAGAAGGTTTATTGACAGATCTCGTCTTCTTCCTGGCTT 1017
Query 1014 CCAAGCTCGTTAAGACCGTCCCTCAAGCAGCAGCAACGACGTGTTACGTGGCAACAAATC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCAAGCTCGTTAAGACCGTCCCTCAAGCAGCAGCAACGACGTGTTACGTGGCAACAAATC 1077
Query 1074 CAAGACTGGTGAACGTATCGGGAAAGTATTTTACGGATTGTAATGAAACGACACCGTCTG 1133
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1078 CAAGACTGGTGAACGTATCGGGAAAGTATTTTACGGACTGTAATGAAACGACGCCGTCTG 1137
Query 1134 GACTCGGAACCAACTCCAGC-GAAGCTACCAAATTATGGGCTGCTTCTGAGATTCTGGTT 1192
|||||||| ||||||| | | || |||||||||||||||||||||||||||||||||||
Sbjct 1138 GACTCGGATCCAACTC-ATCCGACGCTACCAAATTATGGGCTGCTTCTGAGATTCTGGT- 1195
Query 1193 A-CTCAACATTCCAAGACCAGTTTCGACCCATGTAGCTAA-GAAGAAGAAAAA---GTAA 1247
| |||||||||||||| ||||||||||||| ||||||||| ||| || ||||| ||||
Sbjct 1196 AGCTCAACATTCCAAGGCCAGTTTCGACCCTTGTAGCTAAAGAAAAACAAAAAAAAGTAA 1255
Query 1248 TTATCTTATCTTCAT-A--TACCC-CC-TTAGGAAAAAAGTTA-TACTAGTATATCTTAG 1301
||||||||||||| | | ||||| || ||||||||||||||| ||||| || | ||||
Sbjct 1256 TTATCTTATCTTCTTCACATACCCACCCTTAGGAAAAAAGTTAATACTAA-AT-T-TTAG 1312
Query 1302 TAGATGAGAGAAA-ATATCACAAAAGTTTAGTTGATATATACA-AAT-AGTATCCTGTTT 1358
||||||||| ||| |||| | ||| |||||||||||||||| | ||| |||||||| |||
Sbjct 1313 TAGATGAGA-AAATATATTATAAA-GTTTAGTTGATATATATACAATTAGTATCCTATTT 1370
Query 1359 CTATAGTGCGAATGCGAAGTTGATGTA----GT---CTTTGTTTATACT-AACGTTATAT 1410
||||||||||||||||||| |||||| || ||||||||||||| || |||||||
Sbjct 1371 CTATAGTGCGAATGCGAAGCGGATGTACTTTGTATTCTTTGTTTATACTTAA-GTTATAT 1429
Query 1411 TAAACAATATGAGAACAATTAATTATATAA-GATATATTTGCTGAAGAGTTCAACTTGGA 1469
|| ||| |||||||||||||||||||| || | || || || ||||||||||||||||||
Sbjct 1430 TATACA-TATGAGAACAATTAATTATAAAAAG-TACATATGTTGAAGAGTTCAACTTGGA 1487
Query 1470 CTAATATACTAAAGTTTTAGAATAATAAAGTTAAGTAGGAAATCATAATGTCAATCATTA 1529
||| ||||||||| || ||| ||||||||| |||| |||||||| ||||||||||||||
Sbjct 1488 CTATTATACTAAAATT--AGATTAATAAAGTGAAGTGGGAAATCAAAATGTCAATCATTA 1545
Query 1530 GTTTCGAA-GTGCTCGGAAGTTTGATAATTATGTGATTA--AACTCATTTGGACTGATCT 1586
|||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1546 GTTTCGAAAGTGCTCGGAAGTTTGATAATTTTGTGATTATTAACTCATTTGGACTGATCT 1605
Query 1587 GTGAGAGATCTCTCCCTCTCTCTTATCGTTTT 1618
||||||||||||||||||||||||||||||||
Sbjct 1606 GTGAGAGATCTCTCCCTCTCTCTTATCGTTTT 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5