BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24060.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889756 jgi|Araly1|889756|Al_scaffold_0007_1742 1690 0.0
Ahg935641 jgi|Araly1|935641|scaffold_403629.1 209 4e-53
> Ahg889756 jgi|Araly1|889756|Al_scaffold_0007_1742
Length=1041
Score = 1690 bits (915), Expect = 0.0
Identities = 1002/1042 (96%), Gaps = 14/1042 (1%)
Strand=Plus/Plus
Query 189 ATGGATACGGCTCAGTGGCCACAGGAGATTGTAGTGAAGCCCTTGGAAGAAATAGTAACA 248
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGATACGGCTCAATGGCCACAGGAGATTGTAGTGAAACCCTTGGAAGAAATAGTAACA 60
Query 249 AACACATGCCCAAAGCCGCAACCGCAACCGCTTCAACCGCAGCAGCCACCGTCGGTGGGT 308
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 61 AACACACGCCCAAAGCCGCAACCGCAACCGCTTCAACCGCAGCAGCCATCGACGGCGGGT 120
Query 309 GGAGAGAGGAAGGCAAGGCCAGAAAAGGATCAAGCTGTAAACTGTCCGAGATGTAACTCA 368
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GGAGAGAGGAAGGCAAGGCCAGAAAAGGACCAAGCTGTAAACTGTCCGAGATGTAACTCA 180
Query 369 ACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAGCCAAGATACTTCTGC 428
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAACCAAGATACTTCTGC 240
Query 429 AAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGT 300
Query 489 GGCTCAAGAAAGAACAAGAGATCTCACTCTTCTTCTTCTGATATTAGTAACAA---TCAC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GGCTCAAGAAAGAACAAGAGATCTCACTCTTCTTCTTCTGATATTAGTAACAACAATCAC 360
Query 546 TCGGATTCTA-CACAACCAGCTACAAAGAAGCATCTCTCTGATCATCACCACCACCTCAT 604
|||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 361 TCGGATTC-AGCACAACCAGCTACAAAGAAACATCTCTCTGATCATCACCATCACCTCAT 419
Query 605 GAGCATGTCTCAACAAGGTTTGACCGGTCAAAACCCTAAATTCCTTGAGACGACCCAACA 664
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 GAGCATGTCTCAACAAGGTTTGACCGGTCAAAACCCTAAATTCCTCGAGACGACCCAACA 479
Query 665 AGATCTCAATTTAGGTTTTTCACCACATGGGATGATTAGGACCAACTTCACTGACCTCAT 724
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 480 AGATCTCAATTTAGGTTTTCCACCACATGGGATGATCAGGACCAACTTCACTGACCTCAT 539
Query 725 CCacaacattggcaacaaca-c--caaca--a----gagcaacaacaataacaaTCCATT 775
||| |||||||||||||||| | ||||| | ||||||||||||||||||||||||
Sbjct 540 CCATAACATTGGCAACAACAGCAACAACACCAACAAGAGCAACAACAATAACAATCCATT 599
Query 776 GATTGTTTCTTCATGTTCTGCCATGGCTACTTCTTCTCTGGATCTCATAAGAAACAATAG 835
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTTGTTTCTTCATGTTCTGCCATGGCTACTTCTTCTCTGGATCTCATAAGAAACAATAG 659
Query 836 TAACAATGGGAATTCTTCAAATTCTTCCTTCATGGGATTTCCAGTTCATAATCAAGATCC 895
||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 660 TAATAACGGGAATTCATCAAATTCTTCCTTTATGGGATTTCCAGTTCATAATCAAGACCC 719
Query 896 AGCATCAGGAGGGTTTTCAATGCAAGATCATTACAAGCCTTGCAACACAAACACCACACT 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCATCAGGAGGGTTTTCAATGCAAGATCATTACAAGCCTTGCAACACAAACACCACACT 779
Query 956 GCTAGGGTTTTCATTAGATCATCATCATAATAATGGATTTCATGGAGGGTTTCAAGGAGG 1015
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 780 TCTAGGGTTTTCATTAGATCATCATCAGAATAATGGGTTTCATGGAGGGTTTCAAGGAGG 839
Query 1016 AGAAGAAGGTGGAGAAGGTGGTGATGATGTGAATGGAAGGCACTTGTTTCCTTTTGAGGA 1075
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAAGAAGGTGGAGAAGGCGGTGATGATGTGAATGGAAGGCACTTGTTTCCTTTTGAGGA 899
Query 1076 TTTGAAATTGCCAGTTTCTTCTTCATCAGCAACAATTAATGTCGACATTAATGAACATCA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTGAAATTGCCAGTTTCTTCTTCATCAGCAACAATTAATGTCGACATTAATGAACATCA 959
Query 1136 GAAGCGAGGAAGCGGTAGTGATGCAGCTGCTACGTCTGGTGGGTATTGGACTGGGATGTT 1195
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGCGAGGAAGTGGTAGTGATGCAGCTGCTACGTCTGGTGGGTATTGGACTGGGATGTT 1019
Query 1196 GAGTGGAGGATCATGGTGCTAA 1217
||||||||||||||||||||||
Sbjct 1020 GAGTGGAGGATCATGGTGCTAA 1041
> Ahg935641 jgi|Araly1|935641|scaffold_403629.1
Length=1153
Score = 209 bits (113), Expect = 4e-53
Identities = 172/200 (86%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 312 GAGAGGAAGGCAAGGCCAGAAAAGGATCAAGCTGTAAACTGTCCGAGATGTAACTCAACC 371
|||||||| ||||| ||| || | || || | |||| ||||| ||||||||||| |||
Sbjct 231 GAGAGGAAAGCAAGACCACAAGA-GA--AA-C--TAAATTGTCCAAGATGTAACTCTACC 284
Query 372 AACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAGCCAAGATACTTCTGCAAA 431
|||||||||||||||||||||||||| |||||| | || || ||||||||||||||||||
Sbjct 285 AACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAA 344
Query 432 GGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATTCCTGTTGGCGGTGGC 491
|||||| ||||||||||||||||||| || || |||||||| ||||||| || || ||
Sbjct 345 GGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGC 404
Query 492 TCAAGAAAGAACAAGAGATC 511
||||||||||||||||||||
Sbjct 405 TCAAGAAAGAACAAGAGATC 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5