BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24080.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945698 jgi|Araly1|945698|scaffold_701927.1 802 0.0
> Ahg945698 jgi|Araly1|945698|scaffold_701927.1
Length=780
Score = 802 bits (434), Expect = 0.0
Identities = 506/541 (94%), Gaps = 4/541 (1%)
Strand=Plus/Plus
Query 184 CTAAGAAAGCGTTAGATCTCGGACCCGACGGCATTATGTTCCCAATGGTCGAAACCGGAA 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 222 CTAAGAAAGCGTTAGATCTCGGACCCGACGGCATTATGTTCCCGATGGTCGAAACCGGAA 281
Query 244 GATCTGCATCCGAGGCGGTCTCGTTTTGCCTGTATCGTCCTGACGGTGTTCGCGGCTGTG 303
||||||| ||||| || ||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 282 GATCTGCCTCCGAAGCTGTCTCGTTTTGTCGGTATCGTCCCGACGGTGTTCGCGGCTGTG 341
Query 304 CTTACTCCGTTGTGAGAGACTCCAGCTTCGGATTTAACGAAGGGTATTTGGGTAATTACG 363
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 342 CTTACTCCGTTGTGAGAGACTCCAACTTTGGATTTAACGAAGGGTATTTGGGTAATTACG 401
Query 364 CTGATAAGCTCTTCATTATGTGCCAGATTGAATCAGAGGAAGGTATGAAA-AATGTGAAG 422
|||||||||||||||| ||||| ||||| |||||||| |||||| | ||| |||||||||
Sbjct 402 CTGATAAGCTCTTCATCATGTGTCAGATAGAATCAGACGAAGGTGT-AAAGAATGTGAAG 460
Query 423 GAGATCATAGCCGTTGATGGGATGGATTGTGTGATGATGGGGCCGAGAGATCTGAGTGCG 482
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GAGATCGTAGCCGTTGATGGGATGGATTGTGTGATGATGGGGCCGAGAGATCTGAGTGCG 520
Query 483 AGTTTGGGGTTACTTAACGATCCAGGAAACCCGAAGGTGAAGTCGGTCATGAGGGTGGCT 542
||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 521 AGTTTGGGGCTACTTAACGATCCAGGAAACCCGAAGTTGAAGTCCGTCATGAGGGTAGCG 580
Query 543 GAGACGGCGGTGTTGGCCTCTGATCCGGCGAATGGTGGAGCTTACTTGGCAGGGATGGCC 602
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 581 GAGACGGCGGTTTTAGCATCTGATCCGGCGAATGGCGGAGCTTACTTGGCAGGGATGGCC 640
Query 603 ACG-GCTCAGGACAAAACCGGTGATCTCAAGGCACGTGGGTATCACGTGGTGCTCGGGTC 661
| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 641 A-GAGCTCAGGACAAAACCGGTGATCTCAAGGCACGCGGGTATCACGTGGTGCTTGGGTC 699
Query 662 AACCGATGTGTCGCTGTACAAGAAGGCTGTGGTTGATGAGGTCAACGCTTTTAAAGCGTA 721
||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 700 AACTGATGTATCTTTGTACAAGAAGGCTGTGGTTGATGAGGTCAACGCTTTTAAAGCTTA 759
Query 722 G 722
|
Sbjct 760 G 760
Score = 176 bits (95), Expect = 2e-43
Identities = 155/183 (85%), Gaps = 7/183 (4%)
Strand=Plus/Plus
Query 3 CCTCCTCCACTTCTCTCAGTCA-CAATGGCGACCAAAAAATCTCTGAAATCACGTCTCCA 61
||||||||| |||||||| | ||||||| |||||||||| |||||||||||||||||
Sbjct 2 CCTCCTCCA---CTCTCAGT-AGCAATGGCTTCCAAAAAATCACTGAAATCACGTCTCCA 57
Query 62 AGATGGAGAAAAGCTTCTCGGCCACTTTCTTCTCTCCTTT-TCTCCGGAGCTTGCAGAGA 120
|||||||||||| || || || |||||||||||||| ||| || |||||||| || ||||
Sbjct 58 AGATGGAGAAAAACTGCTTGGTCACTTTCTTCTCTC-TTTCTCACCGGAGCTCGCGGAGA 116
Query 121 TCGCTGCAAGAGCTGGATTTGACTTCATTGTCGTCTACCTTGAGCACGGTGCCGGCGGGA 180
||||||| |||||||||| |||||||| ||||| | | ||||| || ||||||||||
Sbjct 117 TCGCTGCCCGAGCTGGATTCGACTTCATAATCGTCGATATGGAGCATGGCGCCGGCGGGA 176
Query 181 TTC 183
|||
Sbjct 177 TTC 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5