BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24090.1
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492454 jgi|Araly1|492454|fgenesh2_kg.7__1887__AT4G24090.1 1441 0.0
> Ahg492454 jgi|Araly1|492454|fgenesh2_kg.7__1887__AT4G24090.1
Length=993
Score = 1441 bits (780), Expect = 0.0
Identities = 932/1002 (93%), Gaps = 24/1002 (2%)
Strand=Plus/Plus
Query 2 TCAAAATGCAATCTTTATCTCTGCAATCGCTTCCATGGAAACCAAATTCAGTGACTTTAC 61
|||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 TCAACATGCAATGTTTATCTCTGCAATCGCTTCCATGGAAACCAAATTCAGTGGCTTTAC 60
Query 62 CTGAAATTAATCTTTTGAATCCCAAGCAATTGACTGCCTCGAGTTCTCAGTATCGTAGAA 121
|||||||| |||||||||||||||| ||| |||| || |||||||||| |||||||||||
Sbjct 61 CTGAAATTTATCTTTTGAATCCCAAACAAATGACGGCTTCGAGTTCTCCGTATCGTAGAA 120
Query 122 CTCGAAACTGGAGAA-TTAGAAGTTCGTCGGAAGATAATGTAG-CAATTTCGAGTGACGG 179
|||||||||||| || ||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 121 CTCGAAACTGGA-AACTTAGAAGTTCGTCGGAAGAGAATGTAGCCAA-TTCGAGTGACGG 178
Query 180 CGGAGATTTGAAGAATTCTCTGTCCGGTATTGTGGGAAATCAAGTGGAGGAGCTATTGAG 239
||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 179 CGGAGATTTGAAGAAGTCGCTGTCAGGTATCGTGGGAAATCAAGTGGAGGAGCTATTTAG 238
Query 240 CAGAGAAGAGAACAAAG-GTTTGCTTGATGGTCTGGAAAAAGCTTCGTTGAGAGTGGAGA 298
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CAGAGAAGAGAAC-AAGAATTTGCTTGATGGTCTGGAAAAAGCTTCGTTGAGAGTGGAGA 297
Query 299 TTGCGAAGAGAGAGCTCGAAGATATAGAGAGACAAGAAATTGAGGCGAAATTGCTACAGG 358
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 298 TAGCGAAGAGAGAGCTCGAAGAGATAGAGAGACAAGAAATTGAGGCGAAATTGTTACAGG 357
Query 359 ATTATATTAATCAGCTCGAATCAAGAGCCGCAGAGATTGCAGAATGCCAGCAGGAGATTG 418
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 ATTATGTTAATCAGCTCGAATCAAGAGCCGCAGAGATCGCAGAATGCCAGCAGGAGATTG 417
Query 419 ACGCAGCAAGATCAATGGTTGAGGAAGCAGAACGCTCCTTGTCATTAGCAGATAACTC-G 477
|||||||||||||||||||||||||||||||||| | ||||| ||||||||| || |
Sbjct 418 TCGCAGCAAGATCAATGGTTGAGGAAGCAGAACGCGCTTTGTCCTTAGCAGAT-AC-CAA 475
Query 478 A-CAATTGGAAGTTCGGAGAAA--GGTTATTCGATTGATAAAGACAAGGAGAGGTTAGAA 534
| ||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||
Sbjct 476 AGCAATTGGAAGTTC--AGAAATGGGTTATTCGATCGACAAAGACAAGGAGAGGTTAGAA 533
Query 535 TCTGCAAAAGCGGCAGTGATCGCAGCTGCGGTTGGGACCATTGCGGAACTCCCATTTGCT 594
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 534 TCTGCGAAAGCGGCAGTGATCGCAGCTGCGGTTGGTACCATTGCGGAACTCCCATTTGCT 593
Query 595 CTTTCTCAAGTCGCAAGCATGGAGCAGCTTGTTCTGCCCCTGGGAATAGCGTTTGCAAGC 654
|||||||||||| | ||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 594 CTTTCTCAAGTCTCGAGCATTGAGCAGCTCCTTCTTCCCCTGGGAATAGCGTTTGCAAGC 653
Query 655 TGTGCATTGTTTGGAGTCACATTCAGGTATGCAGTCAGAAGAGACTTGGATGATAATCAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 654 TGTGCATTGTTTGGAGTCACATTCAGGTATGCAGTCAGAAGAGACTTGGATGATAGTCAT 713
Query 715 CTCAAATCCGGAGCCGTTGCAGCTTTTGGGTTTGTTAAAGGACTTGGTATGTTGAGCAGA 774
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTCAAATCCGGAGCAGTTGCAGCTTTTGGGTTTGTTAAAGGACTTGGTATGTTGAGCAGA 773
Query 775 GGACCGCCATTGGAGCTGAGCTGGGAAAGCTTGTTTTCACATGGGATAGACGGCGCCGTT 834
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 774 GGACCGCCATTGGAGCTGAGCTGGGAAAGCTTGTTTTCACATGGCATAGACGGCGCCATT 833
Query 835 TTGGTGTCTCAGAGCGTCTTGATATTTGCGTTTGCGTCCATAGGTTTGGACTTCTGTTTC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTGGTGTCTCAGAGCGTCTTGATATTTGCGTTTGCGTCCATAGGTTTGGACTTCTGTTTC 893
Query 895 AAGATGAAGCTCTTAAGACCATTTCCTAGCTCTGACTAG-A-T-TG-A-A-GA-GCAAAT 947
|||| ||| ||| ||||||||||||||||||| |||||| | | || | | || |||| |
Sbjct 894 AAGACGAAACTCCTAAGACCATTTCCTAGCTCCGACTAGTAGTATGTAGAAGAAGCAA-T 952
Query 948 TAAAAATGTAGAAATGAACAAAATCTT-CTTTTGAAGACTTT 988
|||||||||||||||||||||| | || |||| |||||||||
Sbjct 953 TAAAAATGTAGAAATGAACAAATTATTACTTT-GAAGACTTT 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39380973261
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5