BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24110.1
Length=882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945695 jgi|Araly1|945695|scaffold_701924.1 1182 0.0
> Ahg945695 jgi|Araly1|945695|scaffold_701924.1
Length=799
Score = 1182 bits (640), Expect = 0.0
Identities = 743/791 (94%), Gaps = 13/791 (2%)
Strand=Plus/Plus
Query 41 AAAATACAGAAATGTGTAGGTCGCCCGATTTCGAGCGTTATGTCGAGAAAGAGAGCTTAA 100
|||| | |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 11 AAAAGAGAGAAATGTGTAGATCGCCGGATTTCGAGCGTTATGTTGAGAAAGAGAGCTTAA 70
Query 101 AGGTTAAAGCTTTCTTCGTCCGGTTCACAGGTTTACCCACCCGAGGATTCTTACCGGATT 160
|||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||
Sbjct 71 AGGTTAAAGCTTTCTTCGTCAGGTTCACTGGTTTACCCACACGAGAATTCTTACCGGATT 130
Query 161 CTCTCACTCTTCTCTACCCACCACGAATCAACGAAGCTGCTTTCGAGCTTGATGGGTCCA 220
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 131 CTCTCACTCTTCTCTACCCACCACGAATCAACGAAGCGGCTTTCGAGCTCGATGGGTCCA 190
Query 221 AGATCCGACCCGATTCCCCAGCTTTCGTGACGCTTC-ACAGAGTCGTGAAAGGAGGAGAC 279
|||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||
Sbjct 191 AGATCCGACCCGATTCTCCAGCGTTCGTGACGC-TCTACAGAGTCGTGAAAGGAGGAGAC 249
Query 280 GTGATTTACGGGTCAAGAGAACGTGTTCGGGTCTGGGAAGGGATCCGCTTCGAGGTGTAC 339
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 250 GTGATTTACGGGTCTAGAGAACGGGTTCGGGTCTGGGAAGGGATCCGTTTCGAGGTGTAC 309
Query 340 ATGAGTGAGGAGAGGGTGATAAAAGGTATTTTCAGAAAAGACGAAG-GAGACAAGTGGAA 398
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 310 ATGAGTGAGGAGAGGGTGATAAAAGGTATTTTCAGAAAAGAAGAAGTG-GACAAGTGGAA 368
Query 399 ACTTGAGTGCGAGTGTGAGATGGAAGAGGAAGGAGCGGCGGAAGTTGTTGTTGCGGCGGA 458
|||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 369 ACTTGAGTGCGAGTGTGAGATGGAGGAGGAAGGTGCGGCGGAGGTTGTTGTAGCGGCGGA 428
Query 459 GGGACACGTGGCAACAGCGACGATGGCGAGGAAACATAGAAGAAGGAGAAAGCAAAAGAT 518
|||||||||||| || |||||||||||||||||||||||| ||||||| ||||| | |||
Sbjct 429 GGGACACGTGGCGACGGCGACGATGGCGAGGAAACATAGACGAAGGAGGAAGCAGAGGAT 488
Query 519 TGGGTTTGAGTGTTTGGAGGAGATACCGGAGGAGAGAGAGGAAGGGAGGGATTCTGACGG 578
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 489 TGGGTTTGAGTGTTTGGAGGAGATACCGGAGGAGAGAGAGGAAGGGAGAGAATCTGACGG 548
Query 579 CGGCGTGTGTTTTTGCACGTGTA---GCGGC---GAATCTGACGACGGAGAGGGAGAGTG 632
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 549 CGGCGTGTGTTTTTGCACGTGTAGCGGCGGCGGTGAATCTGACGACGGAGAGGGAGAGTG 608
Query 633 GGAAGAGGTGGAATGGACGGCTGAGATGGAGTCTGAGACAGAAGGAATGGGATGGGCCGT 692
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 609 GGAGGAGGTGGAATGGACGGCTGAGATGGAGTCTGAGACAGAGGGAATGGGATGGGCCGT 668
Query 693 AGATTTGGGGATTTGGGTTATGTGTTTGGGTGTGGGCTATTTAGTGTCTAAAGCCTCTAC 752
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 669 TGATTTGGGGATTTGGGTTATGTGTTTGGGTGTGGGCTATTTGGTGTCTAAAGCCTCTAC 728
Query 753 CAAAACCTTGACAAGTGGGAGAAGAAGAAGGACAAGAAGAACCTTCTTCTAATTCCTTGT 812
|||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 729 CAAAACCTTGACAAGTGGGAGAAGAAGAAGGACAAGAA---CTTTCTTCTAATTTCTTGT 785
Query 813 GTAATCAATCA 823
|||||||||||
Sbjct 786 GTAATCAATCA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32671339869
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5