BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24130.1
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492450 jgi|Araly1|492450|fgenesh2_kg.7__1883__AT4G24130.1 1033 0.0
> Ahg492450 jgi|Araly1|492450|fgenesh2_kg.7__1883__AT4G24130.1
Length=728
Score = 1033 bits (559), Expect = 0.0
Identities = 685/741 (92%), Gaps = 28/741 (4%)
Strand=Plus/Plus
Query 1 ATTATCTTCCAAAATCCTCACCACAAAACATTATATAATTTCCTCTTCATATTTCAAGAA 60
||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 1 ATTATCTTCCAAAATTTTCACCAC-AAACATTATATAAATTCCTCTTCATATTTGAAGAA 59
Query 61 AACTTTAATCtttttttGTGTGTAGAATTCTATATTTCTGGTAACTAAATGGCGAGCGAG 120
||| |||||| |||| | |||||||||||||| |||| ||||||||||||||||||||
Sbjct 60 AACATTAATC---TTTTCT-TGTAGAATTCTATAATTCTCGTAACTAAATGGCGAGCGAG 115
Query 121 GGAGTTGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGGGCGGAGGAA 180
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 116 GGAGTCGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGAGCGGAAGAA 175
Query 181 TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT 235
Query 241 TTGAAGAATCTTGTTGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TTGAAGAATCTTGTGGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA 295
Query 301 GACACTCCTTACGAGCATTTCTTCGAAGCCACCAACACTCGTGTCTCCTACGGTCTCGAA 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 296 GACACTCCTTACGAGCATTTCTTCGAAGCAACCAACACTCGTGTCTCCTACGGTCTCGAG 355
Query 361 GTCACCGCCTATGTCGACAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTCACCGCCTATGTCGAAAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG 415
Query 421 ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT 475
Query 481 TACTTCAAGACTCCTATGGGAATCGGCAGGTCTTTCCCCGTTACCGGATTCATGGACGAG 540
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 476 TACTTCAAGACTCCTATGGGAATCGGCAAGTCTTTCCCCGTTACCGCATTCATGGACGAG 535
Query 541 GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAACTAAACCAACTAATAATTATTC 600
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 536 GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAATTAAACCATTTAATAATTATTC 595
Query 601 TTATGAT--T-AT--T-ACATTTTGTGG-TGCTTTTTTA-TTTT-ATTT------CTTGT 645
||||||| | || | |||||||| || ||||||| || |||| |||| |||||
Sbjct 596 TTATGATAATTATAATTACATTTTG-GGATGCTTTTATAATTTTTATTTTAATATCTTGT 654
Query 646 AAGGTTGCTCTATGCTATTAAATTCTATCAATAATACATTTTCTGGGAGTGTTGATTATT 705
||||||||||| ||| |||| | | || || || ||||||||||||| ||||||||||
Sbjct 655 AAGGTTGCTCTCTGCCATTA--T-CAAT-AA-AA--CATTTTCTGGGAGCGTTGATTATT 707
Query 706 TTTCCTACAAACTTTATTCAT 726
|| |||| |||| ||||||||
Sbjct 708 TTCCCTAAAAACGTTATTCAT 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27715360659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5