BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24140.1
Length=1832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492449 jgi|Araly1|492449|fgenesh2_kg.7__1882__AT4G24140.1 2874 0.0
> Ahg492449 jgi|Araly1|492449|fgenesh2_kg.7__1882__AT4G24140.1
Length=1825
Score = 2874 bits (1556), Expect = 0.0
Identities = 1745/1834 (95%), Gaps = 22/1834 (1%)
Strand=Plus/Plus
Query 4 ATCTCCTAGTCTCAACTCTCAAATagagagagaaaaacagaaagacagagagagGTTCTA 63
|||| ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1 ATCTTCTATTCTCAACTCTCAAATAGAGAGAGAAAAGGAGACAGACAGAGAGAGGTTCTA 60
Query 64 TATATTATAGATAAAGTACATTACACAATTGTACAAGTGGAAAAAT-CATCACGGA--TC 120
|||||||| ||||||||||||||||||||||||| |||| | ||| ||||||||| ||
Sbjct 61 TATATTAT--ATAAAGTACATTACACAATTGTACAGGTGG-ACAATCCATCACGGATCTC 117
Query 121 TC-TC-----T-TCAAATATATAAAGAAGATTTGTATATCAAACTCTCTAAGCTTTTGTT 173
|| || | ||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 118 TCTTCATATATCTCAAATATATAAAGAAGATTTGTGTATTAAACTCTCTAAGC-TTTGTT 176
Query 174 GAGCCATGGCTGTGATGAAGATAAAAGGAGCAGCGACCGTAGCAGGAACATGGCTGAACG 233
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 177 GAGCCATGGCTGTGATGAAGATAAGAGGAGCAGCGACCGTAGCAGGAACATGGCTAAACG 236
Query 234 AAGCCGTTAGCTTCGTCGTGTTCTGTATCTTAGACATCGTTGATTCATTTCTTTGTCTCC 293
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 237 AAGCCGTTAGCTTCGTCGTGTTCTGTGTCTTAGACATCGTTGATTCATTTCTTTGTCTCC 296
Query 294 TCTACAAAGCAGCTGATTATCTCTTCGAAGCCGAGTGGAAGCCTTGCTATTGCTTGTCGG 353
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCTACAAAGCAGCTGACTATCTCTTCGAAGCCGAGTGGAAGCCTTGCTATTGCTTGTCGG 356
Query 354 ACAAGGAACCCATCACCACAACTCGAGGGAAGATCCTTTTGTCTCACAATAATGGCGAGT 413
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 357 ACAAGGAACCCATCACGACAACTCGAGGGAAGATCCTTTTGTCTCACAATAATGGCGAAT 416
Query 414 CCAAGATCCTCACTCTTTCTCCGCTTCAAGAACTCGGCGGACGTTCCAAGATTGAGCTGG 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 417 CCAAGATCCTCACTCTTTCTCCGCTTCAAGAACTCGGTGGACGTTCCAAGATTGAACTGG 476
Query 474 AGGATATCTCCGAGACCCTTTACACACGTCCTTCTCTTATTTCCGACATCTC-AACCATC 532
||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||
Sbjct 477 AGGATATCTCCGAGACCCTTTACACACGTCCTTCTCTTATTACCGACCTCTCTAA-CATC 535
Query 533 TCCGTTAACGAGCTCAATAAGCGGTTCGTTAAGGTTACTCGGTCAGAGTCTGAGTGTAGC 592
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 536 TCCGTTAACGAGCTCAATAAGCGGTTCGTTAAGGTTACTCGGTCGGAATCCGAGTGTAGC 595
Query 593 GGCCATAATGAGAAGACCAAGAACAAAAGGAGGAGATCATTAACGAAGTCAAGCTTGACG 652
|||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 596 GGCCATCATGAGAAGACCAAGAACAAAAGGAGGAGATCAGTAATGAAGTCAAGTTTGACG 655
Query 653 GTGAACTTCACGGTCGTTGAGATGCTTCGGGGAAAGATCAGACCGCAGAATTTGAACCAC 712
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 656 GTGAACTTCACGGTCGTTGAGATGCTTCGGGGAAAGATCAGACCACAGAATTTGAGCCAC 715
Query 713 GATATCTCTCGATGGTCGGATTGTGATTGTGGGTTTTGTACATCGTGGGCCTCTACTTCT 772
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 716 GATATCTCCCGATGGTCGGATTGTGATTGTGGCTTTTGTACATCGTGGGCCTCTACTTCC 775
Query 773 GACAAAAACCATTCCCTCTTTGTCAAAACTCAAATCCCAAATGGGGTAACAGCGAAAGAG 832
|||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 776 GACAAAGATCATTCCCTCTTTGTCAAAACTCAAATCCCAAATGGGGTGACAGCCAAAGAG 835
Query 833 GATGTTCTTTTCATACATGGTTTCATATCTTCATCAGCGTTTTGGACGGAGACGGTGTTT 892
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 836 GATGTTCTGTTCATACATGGTTTCATATCTTCATCAGCGTTTTGGACGGAGACAGTGTTT 895
Query 893 CCAAGCCTGTCAGCCTCCTCCTCGACTCATAGACTCTTCGCCGTGGATCTTCTAGGATTC 952
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 896 CCAAGCCTGTCAGCTTCCTCATCGGCTCATAGACTCTTCGCCGTGGATCTTCTAGGATTC 955
Query 953 GGAAAGAGTCCAAAGCCAGCTGATTCACTCTACACGTTGAGAGAACACGTAGAGATGATC 1012
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 956 GGCAAGAGTCCAAAGCCAGCTGATTCACTCTACACGTTGAGGGAACACGTAGATATGATC 1015
Query 1013 GAGAAATCTGTCTTACACAAATACAATGTGAAGTCTTTCCACATCGTGGCTCACTCTTTG 1072
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GAGAAATCTGTCTTACACAAACACAATGTGAAGTCTTTCCACATCGTGGCTCACTCTTTG 1075
Query 1073 GGATGCATTTTGGCGCTTAGCCTAGCCGCTAGACATGGCGGCTTAATCAAGTCGCTTACC 1132
|||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||||
Sbjct 1076 GGATGCATTTTGGCTCTTAGTCTCGCCGCTAGACACGGCAGCTTAATCAAGTCGCTTACC 1135
Query 1133 CTCCTTGCTCCGCCGTACTATCCAGTACCGAAGGGAGAGA-AAAAGCCGAGGCAGTACGT 1191
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1136 CTCCTTGCTCCGCCGTACTATCCAGTACCGAAGGGAGAGACGAAA-CCGAGGCAGTACGT 1194
Query 1192 GATGAAGAAGGTGGCGCCGAGGAAGGTTTGGCCACCAATAGCTCTCGGAGCGTCGATGGC 1251
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1195 GATGAAGAAGGTGGCGCCGAGGAAGGTTTGGCCGCCAATAGCTCTAGGAGCGTCGATGGC 1254
Query 1252 TTGTTGGTACGAACACATTAGCCGTACCATTTGTCTCCTCATATGCAAACACCACCGTGT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTGTTGGTACGAACACATTAGCCGTACCATTTGTCTCCTCATATGCAAACACCACCGTGT 1314
Query 1312 TTGGCAATTCATCGCCGGTGTCTTGACCCGAAACAACAGGACTGTAAACTTTTTAATTGA 1371
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1315 TTGGCAATTCATCGCCGGTGTCTTGACCCGAAATAACAGGACTGTAAACTTTTTAATAGA 1374
Query 1372 AGGTTTCATGTGTCACACACACAACGCAGCATGGCATACTCTACATAACATTATATGTGG 1431
|||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1375 AGGTTTCATGTGTCACACGCACAACGCAGCGTGGCACACTCTACACAACATTATATGTGG 1434
Query 1432 GACAGGAAGCAAACTCGATACGTATCTAGACATCGTACGAGATAAACTAAAGTGCAACGT 1491
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GACAGGAAGTAAACTCGATACGTATCTAGACATCGTACGAGATAAACTAAAGTGCAACGT 1494
Query 1492 GACCATCTTCCACGGAGGAGACGACGAACTCATCCCTGTCGAGTGTAGCTACAACGTTAA 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GACCATCTTCCACGGAGGAGACGACGAACTCATCCCTGTCGAGTGTAGCTACAACGTTAA 1554
Query 1552 ACAGCGAATTCCTCGGGCACGAGTTAAGGTTATTGAGCACAAAGATCATATCACTATGGT 1611
| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1555 AGAGCGGATTCCTCGAGCACGAGTTAAGGTTATTGAGCACAAAGACCATATCACCATGGT 1614
Query 1612 CGTTGGCAGACAAGATGAGTTTGCCAGAGAGCTCCAAGAGATTTGGAAGACTTCTTCTTG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 CGTTGGCAGACAAGATGAGTTTGCCAGAGAGCTCCAAGAGATTTGGAAGACTTCTTCTTG 1674
Query 1672 CTAAAATTATGTTTGATGAGAGAACTTGTGATTTATTATGATTGTTCTATGTAATGGGTT 1731
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1675 CTAAGATTATGTTTGATGAGAG--CTTGTGATTTATTATGATTGTTCTATGTAATGAGTT 1732
Query 1732 GGTAAAAATATTCTTA-AGAGTTTTATAATTACAAATTAAGGAAATCCTTATGTATCATG 1790
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1733 GGTAAAAATATTCTTATA-AGTTTTATCATTACAAATTAAGGAAATCCTTATGTATCATG 1791
Query 1791 AGATAATCCAGGAAATGGAGTATTAAATAATAAT 1824
||||||||||||||||||||||||||||||||||
Sbjct 1792 AGATAATCCAGGAAATGGAGTATTAAATAATAAT 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68790982470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5