BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24150.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354358 jgi|Araly1|354358|fgenesh1_pg.C_scaffold_7001531 1301 0.0
Ahg949970 jgi|Araly1|949970|scaffold_801857.1 97.1 3e-19
> Ahg354358 jgi|Araly1|354358|fgenesh1_pg.C_scaffold_7001531
Length=1296
Score = 1301 bits (704), Expect = 0.0
Identities = 786/827 (95%), Gaps = 0/827 (0%)
Strand=Plus/Plus
Query 655 GTAACTGTGGCAGTGGCGACAGGAGGCTCATTGCAGCTGGGGATTGCTTCAAGCGCAAGC 714
||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 469 GTAACAGTGGCAGTGGCAAAAGGAGGCTCATTGCAGCTTGGGATTGCTTCAAGCGCAAGC 528
Query 715 AATAACACGGCTGATCTGGAGCCATGGAGGTGCAAGAGAACAGATGGGAAGAAATGGAGG 774
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AACAACTCGGCTGATCTGGAGCCATGGAGGTGCAAGAGAACAGATGGGAAGAAATGGAGA 588
Query 775 TGCTCTAGAAACGTGATTCCTGATCAGAAATACTGTGAGAGACACACACACAAGAGCCGT 834
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 589 TGCTCTAGAAACGTGATTCCTGATCAGAAATACTGTGAGAGGCACACACACAAGAGCCGT 648
Query 835 CCTCGTTCAAGAAAGCATGTGGAATCATCTCACCAATCATCTCACCACAATGACATTCGT 894
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 649 CCTCGTTCAAGAAAGCATGTGGAATCATCTCACCAATCGTCTCACCACAATGACATTCCT 708
Query 895 ACGGCTAAGAATGATACTAGCCAGCTTGTGAGAACTTATCCTCAGTTTTACGGACAACCT 954
|| ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 709 ACCACTAAGAACGATACTAGCCAGTTTGCGAGAACTTATCCTCAGTTTTACGGACAACCT 768
Query 955 ATAAGCCAGATCCCTGTGCTTTCTACTCTTCCGTCTGCCTCCTCTCCATATGATCACCAC 1014
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 769 GTAAGCCAGATCCCTGTGCTTTCTACTCTTCCGTCTGCTTCCTCTTCATATGATCACCAC 828
Query 1015 AGAGGACTGAGGTGGTTTACGAAAGAAGATGATGCCATTGGAACCTTAAACCCGGAGACT 1074
|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 829 AGAGGATTGAGGTGGTTTAGGAAAGAAGATGATGCCATTGGAACTTTAAACCCGGAGATT 888
Query 1075 CAAGAAGCTGTCCAGCTGAAAGTTGGATCAAGCAGAGAGCTCAAACGGGGATTCGATTAT 1134
||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 889 CAAGACGCTGTCCAGCTGAAGGTTGGATCAAACAGAGAGCTCAAACGCGGATTCGATTAT 948
Query 1135 GATCTGAATTTCAGGCAGAAAGAGCCAATAGTAGACCAGAGCTTTGGAGCATTGCAGGGT 1194
||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 949 GATCTAAATTTCAGGCAGAAGGAGCCAGTAGTAGACCAGAGCTTTGGAACATTGCAGGGT 1008
Query 1195 CTATTAAGTCTAAACCAGACACCACAACATAACCAAGAAACAAGACAGTTTGTTGTAGAA 1254
||||| ||||||||| |||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 1009 CTATTGAGTCTAAACGAGACACCACAACATAACCAAGAGACAAGGCGGTTTGTTGTAGAA 1068
Query 1255 GGAAAGCAAGATGAAGCGATGGGAAGCTCTCTGACACTCTCAATGGCTGGAGGAGGCATG 1314
|| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1069 GGGAAGCAAGACGAAGCAATGGGAAGCTCTCTGACACTATCAATGGCTGGAGGAGGCATG 1128
Query 1315 GAGGAAACAGAGGGAACAAACCAGCATCAGTGGGTTAGCCATGAAGGTCCATCATGGCTC 1374
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 GAGGAAGCAGAGGGAACCAACCAGCATCAGTGGGTTAGCCATGAAGGTCCATCATGGCTC 1188
Query 1375 TATTCAACAACACCAGGTGGACCATTGGCTGAAGCACTGTGTCTCGGTGTCTCCAACAAC 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TATTCAACAACACCAGGTGGACCATTGGCTGAAGCACTGTGTCTCGGTGTCTCCAACAAC 1248
Query 1435 CCAAGTTCTAGTACTACTACTAGTAGCTGCAGCAGAAGCTCAAGCTA 1481
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CCAAGTTCTAGTACTACTACTAGTAGCTGCAGCAGAAGCTCAAGCTA 1295
Score = 667 bits (361), Expect = 0.0
Identities = 425/456 (93%), Gaps = 3/456 (1%)
Strand=Plus/Plus
Query 129 AGAACGCAAGGAAGATTTTGTTGGTGGGTTTGGATTTGGTGTTGTAGAAAATTCGCATAA 188
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 15 AGAACGTAAGGAAGATTTTGTTGGTGGGTTTGGATTTGGAGTTGTAGAAAATTCGCATAA 74
Query 189 AGACGTTATGGTGCTACCTCATCATCACTATTATCCATCATATTCATCACCTTCCTC--- 245
|||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 75 AGACGTTATGGTGCTACCACATCATCATTATCATCCATCATATTCATCACCTTCCTCTTA 134
Query 246 TTCTTCTTTGTGTTACTGTTCTGCTGGTGTTAGCGATCCCATGTTCTCTGTTTCTAGCAA 305
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TTCTTCTTTGTGCTACTGTTCTGCTGGTGTTAGCGATCCCATGTTCTCTGTTTCTAGCAA 194
Query 306 TCAGGCTTACACTTCTTCTCACAGTGGTATGTTCACACCCGCCGGTTCTGGTTCTGCTGC 365
|||||| |||||||||||| ||||| |||||| | | | |||||||||||||| ||||
Sbjct 195 TCAGGCATACACTTCTTCTTACAGTAATATGTTTTCTCACACCGGTTCTGGTTCTACTGC 254
Query 366 TGTGACTGTAGCAGATCCTTTTTTCTCCTTGAGCTCTTCAGGGGAAATGAGAAGAAGTAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TGTGACTGTAGCAGATCCTTTTTTCTCCTTGAGCTCTTCAGGGGAAATGAGAAGAAGTAT 314
Query 426 GAACGAAGATGCTGGTGCAGCTTTCAGCGAAGCTCAATGGCATGAGCTTGAGAGGCAGAG 485
||| ||||| || |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 315 GAATGAAGACGCAGGTGCAGCTTTCAGTGAAGCTCAATGGCAGGAGCTTGAGAGGCAGAG 374
Query 486 GAATATATACAAGTACATGATGGCTTCTGTTCCTGTTCCTCCAGAGCTTCTCACACCCTT 545
||||||||| || ||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 375 GAATATATATAAATACATGATGGCTTCTCTTCCTGTTCCTCCCGAGCTTCTCACTCCCTT 434
Query 546 TCCCAAGAACCACCAATCAAACACTAACCCGGATGT 581
|||||||||||||| |||||||||| ||||||||||
Sbjct 435 TCCCAAGAACCACCCATCAAACACTGACCCGGATGT 470
> Ahg949970 jgi|Araly1|949970|scaffold_801857.1
Length=1152
Score = 97.1 bits (52), Expect = 3e-19
Identities = 94/113 (83%), Gaps = 8/113 (7%)
Strand=Plus/Plus
Query 750 GAGAACAGATGGGAAGAAATGGAGGTGCTCTAGAA-ACGT-GAT-TCCTGATCAGAAATA 806
||||||||| || ||||||||||| ||| | | || | || | | | || |||| |||||
Sbjct 372 GAGAACAGACGGAAAGAAATGGAGATGCGC-AAAAGAAGTCG-TAT-CTAATCACAAATA 428
Query 807 CTGTGAGAGACACACACACAAGA-GCCGTCCTCGTTCAAGAAAGCATGTGGAA 858
|||||||| |||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 429 CTGTGAGAAACACTTACAC-AGAGGCCGTCCTCGTTCAAGAAAGCATGTGGAA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5