BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24160.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945689 jgi|Araly1|945689|scaffold_701918.1 2067 0.0
> Ahg945689 jgi|Araly1|945689|scaffold_701918.1
Length=1296
Score = 2067 bits (1119), Expect = 0.0
Identities = 1243/1303 (95%), Gaps = 7/1303 (1%)
Strand=Plus/Plus
Query 61 TTTGATTTTGTGATTCCGTGATTGTATGAACTTGAGCCGTTTTGCTTCGAGATTAAGAAT 120
||||| ||| || ||| ||||||| ||||||| ||| |||||||| || ||| |||||||
Sbjct 1 TTTGA-TTT-TG-TTCGGTGATTGAATGAACTCGAGTCGTTTTGCGTCAAGACTAAGAAT 57
Query 121 GGCGGAAGAAATCTCAAAGACGAAGGTGGGATCTTCTTCTACTGCTTCGGTGGCTGATTC 180
||| |||||||| || || | |||||| ||||||||||||||||||||||||||||||||
Sbjct 58 GGCTGAAGAAATATC-AA-A-GAAGGTTGGATCTTCTTCTACTGCTTCGGTGGCTGATTC 114
Query 181 ATCTGCTGCTGCGTCGGCTGCAACGAATGCGGCCAAATCAAGATGGAAAATTTTGTGGCC 240
|||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 115 ATCTGCTGCTACGTCGGCTGCAACGAATGCAGCGAAATCAAGATGGAAAATTTTGTGGCC 174
Query 241 TAATTCGCTCCGGTGGATTCCTACGTCCACCGATTACATCATCGCCGCCGAGAAACGTCT 300
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 175 TAATTCGCTCCGGTGGATACCTACGTCCACCGATTATATCATCGCCGCTGAGAAACGTCT 234
Query 301 TCTCTCCATCCTCAAGACGCCTTATGTACAAGAGCAAGTCAGTATTGGTTCAGGACCACC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 235 TCTCTCCATCCTCAAGACGCCTTATGTACAAGAGCAAGTCAATATTGGTTCAGGACCACC 294
Query 361 AGGTTCTAAAATCAGGTGGTTTAGGTCTACGAGCAATGAGTCACGTTACATCAACACTGT 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 295 AGGTTCCAAAATCAGGTGGTTTAGGTCTACGAGCAATGAGTCACGTTACATCAATACTGT 354
Query 421 TACATTTGATGCCAAGGAGGGAGCTCCTACACTCGTCATGGTTCATGGTTATGGTGCTTC 480
||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||
Sbjct 355 TACCTTTGATGCCAAGGAGGGTGCTCCTACACTCGTGATGGTTCATGGATATGCTGCTTC 414
Query 481 TCAAGGGTTTTTCTTCCGTAATTTTGATGCTCTTGCCAGTCGATTTAGAGTGATCGCTAT 540
|||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 415 TCAAGGTTTTTTCTTCCGTAATTTCGATGCTCTTGCCAGTCGGTTTAGGGTGATTGCTAT 474
Query 541 TGATCAACTTGGGTGGGGTGGTTCAAGTAGGCCTGATTTTACATGTAGAAGCACAGAAGA 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGATCAACTTGGGTGGGGTGGATCAAGTAGGCCTGATTTTACATGTAGAAGCACAGAAGA 534
Query 601 AACTGAGGCATGGTTTATCGACTCCTTTGAGGAATGGCGTAAAGCCCAGAATCTCAGTAA 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 535 AACTGAGGCATGGTTTATCGACTCCTTTGAGGAATGGCGTAAAACCCAGAATCTCAGTAA 594
Query 661 CTTTATTCTATTAGGACATTCTTTTGGAGGCTATGTTGCTGCTAAATACGCGCTTAAGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTTTATTCTATTAGGACATTCTTTTGGAGGCTATGTTGCTGCTAAATACGCGCTTAAGCA 654
Query 721 TCCTGAACATGTTCAACACTTAATTCTGGTGGGATCTGCTGGGTTCTCAGCAGAAGCAGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 TCCTGAACATGTTCAACACTTAATTCTGGTGGGATCTGCTGGGTTCTCAGCAGAAGGAGA 714
Query 781 TGCCAAATCAGAATGGCTCACTAAATTTAGAGCAACATGGAAAGGTGCAGTCCTAAATCA 840
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 TGCCAAATCGGAATGGCTCACTAAATTTAGAGCAACATGGAAAGGTGCAGTCCTAAACCA 774
Query 841 TTTATGGGAGTCAAATTTCACTCCTCAGAAGCTGGTTAGAGGATTAGGTCCTTGGGGTCC 900
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 TTTATGGGAGTCGAATTTCACTCCTCAGAAGCTGATTAGAGGATTAGGTCCTTGGGGTCC 834
Query 901 AGGTCTTGTAAATCGGTATACAACTGCAAGATTTGGTGCACATTCGGAGGGAACTGGGCT 960
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 835 AGGCCTTGTAAATCGGTATACAACTGCAAGATTTGGTGCACATTCAGAGGGAACTGTGCT 894
Query 961 AACAGAAGAGGAAGCCAAATTGCTAACCGATTATGTGTACCATACTTTGGCTGCAAAGGC 1020
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 895 AACAGAAGAGGAAGCCAAATTGCTAACCGATTATGTATACCATACTTTGGCTGCAAAGGC 954
Query 1021 TAGTGGAGAGTTATGCTTGAAATACATCTTCTCATTTGGAGCATTTGCTAGGAAGCCCCT 1080
||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 955 TAGTGGAGAATTGTGCTTGAAATACATCTTCTCCTTTGGAGCATTTGCTCGGAAGCCCCT 1014
Query 1081 CTTACAAAGTGCATCAGAGTGGAAAGTGCCAACAACGTTTATCTATGGAATGAATGATTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CTTACAAAGTGCATCAGAGTGGAAAGTGCCAACAACGTTTATCTATGGAATGAATGATTG 1074
Query 1141 GATGAACTATCAAGGTGCGGTGGAAGCGAGGAAATCCATGAAGGTCCCTTGCGAAATCAT 1200
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1075 GATGAACTATCAAGGTGCGGTGGAAGCAAGGAAATCCATGAAGGTCCCTTGCGAAATCAT 1134
Query 1201 TCGGGTTCCACAGGGTGGTCATTTTGTGTTCATAGACAACCCAATTGGTTTTCATTCTGC 1260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1135 TCGGGTTCCACAGGGTGGTCATTTTGTGTTCATAGACAACCCAAGTGGTTTTCATTCTGC 1194
Query 1261 AGTGCTTTATGCTTGCCGCAAGTTTATATCTCAAGACTCCTCTCATGATCAACAACTCCT 1320
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1195 AGTGCTTTATGCTTGCCGTAAGTTTATATCCCAAGACTCGTCTCATGATCAACAACTCCC 1254
Query 1321 AGATGGTCTACGATTGGTTTAGTCATAGTATCTTGTTCCTTTT 1363
||||||| |||| |||||||||| |||||||||||||| ||||
Sbjct 1255 AGATGGTTTACGTTTGGTTTAGTTATAGTATCTTGTTC-TTTT 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5