BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24175.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492444 jgi|Araly1|492444|fgenesh2_kg.7__1877__AT4G24175.1 1483 0.0
> Ahg492444 jgi|Araly1|492444|fgenesh2_kg.7__1877__AT4G24175.1
Length=1046
Score = 1483 bits (803), Expect = 0.0
Identities = 959/1033 (93%), Gaps = 16/1033 (2%)
Strand=Plus/Plus
Query 46 TGCAATGGCGCAACTAATACGACCAATAAGGCAATTGTCGCCGCAATGTAATCACCATTT 105
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TGCAATGGCGCAACTAATACGACCAATAAGGCAATTGTCGCCGCAGTGTAATCACCATTT 60
Query 106 TCGTAATCTCCGGTATTTGTTTTCGAAAAAGCTACCGAACCCACCTTCTTCTATCCCCAC 165
|||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TCGTAATCTCCGCCATTTATTTTCGAAAAAGCTTCCGAACCCACCTTCTTCTATCCCCAC 120
Query 166 TCTTCTTCTCTTCTCGTCTTTCTCCACTG-AAAGGTCTCCACCTCGTCGGCGAATTCGTC 224
||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||
Sbjct 121 TCTTCTTCTCTTCTCGTCTTTCTCCACCGCAAA-GTCTCCACCTCGTCGGAGAATTCGTC 179
Query 225 CCGCGCCACCGGAAGCTTTAAAGCCTACTGTTATTGTTGCCGAAGAAGATGGTGATAACG 284
||||||||||||||||||||| || ||||||| |||| ||||| |||||||||| ||
Sbjct 180 CCGCGCCACCGGAAGCTTTAACTCCAACTGTTA---TTGCTGAAGACGATGGTGATAGCG 236
Query 285 ATGGTTACGAGTCTGATTCGTTGAGGAGTCGTAACCAGCGGAAGCGTGATGCTCGCCGTG 344
|||| | ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 237 ATGGCTCCGAGTCTGACTCGTTGAAGAGCCGTAACCAGCGGAAGCGTGATGCTCGCCGTG 296
Query 345 CCGTTAAATGGGGTATGGAACTTGCTTCCTTCTCCGGTGATCAGGTTAAGCAGATTCTGA 404
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 297 CCGTCAAATGGGGTATGGAACTTGCTTCCTTCTCCGGTGATCAGGTTAAACGGATTCTGA 356
Query 405 AAGCTGCGTCGCTTGGTGAAGAGGTTTATGATGCATTGATGCTTGCGAAGAGACTAGGCT 464
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 AAGCGGCGTCACTTGGTGAAGAGGTTTATGATGCGTTGATGCTTGCGAAGAGACTAGGCT 416
Query 465 CGGATGTTCGAGAAGGAAAGCGTAGACATTTCAACTATATTGGGAAATTGTTGCGTGAAG 524
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 417 CAGATGTTCGAGAAGGAAAGCGTAGACATTTCAATTATATTGGGAAATTGTTGCGTGAAG 476
Query 525 TTGAACCTGATTTGATGGACACTCTGATTAATGCTACAAAGCAGGGTGATCACTCAACGC 584
|||||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||
Sbjct 477 TTGAACCTGATTTGATGGACACTCTGATTAATGCCACGAAGCAGGGGGATCACACAACGC 536
Query 585 TGCAGACGCTGATTAGTTCAGCAAAGGATGTCGCAGATGATGTTGGAGACAGTTATGATG 644
||||||| |||||||||||||| ||||||||||| | ||||||||||| ||| |||||||
Sbjct 537 TGCAGACACTGATTAGTTCAGCGAAGGATGTCGCTGTTGATGTTGGAGGCAGCTATGATG 596
Query 645 ATGATACAGAAACAGAGTCAGAAGATGAAGAGGAGGGGTCTGACGAATATACGGCTATGG 704
||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 597 ATGATACAGAAACAGAGTCAGAAGATGGAGAGGAGGGGTCAGACGAATATATACCTATGG 656
Query 705 CTGCGAGATGGTTTGATGGCCTAATCAGTCAAAATGTGGAACTTACAAAGGAGGTTTATT 764
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 657 CTGCGAGGTGGTTTGATGGCCTAATCAGTCAAAATGTGGAACTTACAAAGGAAGTGTATT 716
Query 765 CTCTTCAGAGTGTTGATTTCGATAGACAGGAATTGCGTAAACTTGTTCGGAAAGTACAGT 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CTCTTCAGAGTGTTGATTTCGATAGACAGGAATTGCGTAAACTTGTTCGGAAAGTACAGT 776
Query 825 TGGTTCATGAGCAAAGAAAAGGCACAACAGAGGAGAAGCAGAAAGAAGTTGAGGCTGCAT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGGTTCATGAGCAAAGAAAAGGCACAACAGAGGAGAAGCAGAAAGAAGTTGAGGCTGCAT 836
Query 885 TAGTGACTGCTGAAAAGTCTCTGAATCAATTCCTCTGCTCCATGGCGAAACAAGTGCACA 944
||||||| |||||||| |||||||| ||||||||||| ||||||||||||||| |||| |
Sbjct 837 TAGTGACCGCTGAAAATTCTCTGAAACAATTCCTCTGTTCCATGGCGAAACAAATGCAGA 896
Query 945 GTGAGCAGACTGATTTGTACTTATGAATGATAATGTGTTCTTGACTCT-CTATTTGTTTT 1003
||||||||||||| |||||||||||||| | |||| |||||||||||| | |||| | ||
Sbjct 897 GTGAGCAGACTGAGTTGTACTTATGAATAACAATGCGTTCTTGACTCTAC-ATTT-TCTT 954
Query 1004 TTATATATATCAGAACTCCATTCTTTCCCCAGA--CATCCAAAGGACCATAGTTTTTTAG 1061
|||| | | | | |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 955 TTATC-A-A--A-A-CTCCATTCTTTCCCCAGAGACATCCCAAGGACCATAGTTTTTTAG 1008
Query 1062 GTGAATGTTGTTA 1074
| |||||||||||
Sbjct 1009 GCGAATGTTGTTA 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5