BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24180.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492443 jgi|Araly1|492443|fgenesh2_kg.7__1876__AT4G24180.1 1291 0.0
> Ahg492443 jgi|Araly1|492443|fgenesh2_kg.7__1876__AT4G24180.1
Length=856
Score = 1291 bits (699), Expect = 0.0
Identities = 810/863 (94%), Gaps = 9/863 (1%)
Strand=Plus/Plus
Query 1 GTTTTGTGAATATTCCAAACTTAATTTCTCCACCAAAAGTACtttttttttttAATAGAG 60
|||||||||||||||||||||| |||||| ||| |||| ||| ||| |||| || | ||
Sbjct 1 GTTTTGTGAATATTCCAAACTTGATTTCTACACAAAAAATAC-TTTGCTTTTGAA-A-AG 57
Query 61 AGACAAAAATAAACAGTGATGATCATAACAGTCCTTCATTCT-CATGTCTCATTCTATTT 119
| | ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 58 A-A-AAAAAAAAACAGTGATGATCATAACAGTCCTTCATTCTCCA-GTCTCATTCTATTT 114
Query 120 CATCATCCTTAGCTTCCTCTTCTTCCATGCATTGCATTTGGTAGGAAGTGATGGTGCTAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CATCATCCTTAGCTTCCTCTTCTTCCATGCATTGCATTTGGTAGGAAGTGATGGTGCTAC 174
Query 180 AATAACCATCGTAAATCGATGCAGCTTCACCGTGTGGCCGGGAATTTTGTCCAACTCCGG 239
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 175 AATCACCATCGTAAACCGATGCAGTTTCACCGTGTGGCCGGGAATTTTGTCCAACTCCGG 234
Query 240 AAGCGGCGATATAGGCACCACCGGCTTCGAGCTCGTTCCCGGTGGTTCACGTTCGTTCCA 299
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 235 AAGCGGCGACATAGGCACCACCGGTTTCGAGCTCGTCCCCGGTGGTTCACGTTCGTTCCA 294
Query 300 AGCTCCAGCTAGCTGGTCAGGTCGGTTTTGGGCACGAACCGGTTGCAACTTCAACTCAGA 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 295 AGCTCCAGCTAGCTGGTCAGGTCGGTTTTGGGCAAGAACCGGTTGCAACTTCAACTCGGA 354
Query 360 CACAGGACAAGGCACCTGCCTAACCGGGGACTGCGGCTCTAACCAGGTCGAATGTAACGG 419
|||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 355 CACAGGCCAAGGCACGTGCATAACCGGAGACTGCGGCTCTAACCAGGTCGAATGTAACGG 414
Query 420 TGCAGGAGCAAAACCGCCCGCTACACTCGCCGAATTCACAATCGGGTCAGGTCCAGCAGA 479
||||||||| ||||| |||||||| || |||||||||||||||||||||||||||| |||
Sbjct 415 TGCAGGAGCGAAACCTCCCGCTACGCTAGCCGAATTCACAATCGGGTCAGGTCCAGAAGA 474
Query 480 CCCGGCCCGTAAACAAGACTTCTACGACGTAAGCCTCGTGGACGGTTACAACGTTCCCAT 539
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 475 CCCGGCCCGTAAACAAGACTTCTACGACGTGAGCCTCGTGGATGGTTACAACGTTCCCAT 534
Query 540 GTTGGTGGAAGCAAGTGGCGGGTCAGAAGGTACTTGCTTA-ACCACGGGATGCGTAACGG 598
|||||||||||||||||||||||||||||||||||| | | || || ||||| |||||||
Sbjct 535 GTTGGTGGAAGCAAGTGGCGGGTCAGAAGGTACTTG-TCAGACAACAGGATGTGTAACGG 593
Query 599 ATCTAAACCAAAAATGTCCAACGGAGCTCCGGTTCGGGTCCGGGTCAGCATGCAAAAGCG 658
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 594 ATCTAAACCAGAAATGTCCAACGGAGCTCCGGTTCGGATCCGGGTCAGCATGCAAGAGTG 653
Query 659 CGTGTGAGGCTTTTGGTAGTCCAGAATATTGTTGTAGTGGCGCGTACGCCTCACCCACCG 718
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 654 CGTGTGAAGCTTTTGGTAGTCCAGAATATTGTTGTAGTGGCGCGTACGCTTCACCAACCG 713
Query 719 AGTGTAAACCATCGATGTACTCGGAGATATTCAAATCTGCGTGTCCAAGATCATATAGCT 778
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 714 AGTGTAAACCATCGATGTACTCGGAGATATTCAAATCGGCGTGTCCAAGATCGTATAGCT 773
Query 779 ACGCGTTCGACGATGCTACAAGTACGTTCACATGCACTGATGCTGATTACACCATCACTT 838
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 774 ACGCGTTCGACGATGCTACAAGTACGTTCACATGTACTGATGCTGATTACACAATCACTC 833
Query 839 TTTGCCCTTCCTTGCCTAGGTAG 861
||||||||| |||||||||||||
Sbjct 834 TTTGCCCTTACTTGCCTAGGTAG 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5