BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G24204.3

Length=944
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329238 jgi|Araly1|329238|fgenesh1_pm.C_scaffold_7001465           665    0.0  


> Ahg329238 jgi|Araly1|329238|fgenesh1_pm.C_scaffold_7001465
Length=474

 Score =  665 bits (360),  Expect = 0.0
 Identities = 425/455 (93%), Gaps = 10/455 (2%)
 Strand=Plus/Plus

Query  206  GATGAGTTCGTTCGATGGTACTTGGGGCTATCCTTCTCAGCTAGAGTGGTGATTTATATT  265
            ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct  25   GATGAGTTCGTTCGATGGTACTTGGAGTTATCCTTCTCAGCTAGAGTGGTGATTTATATT  84

Query  266  ACAGTTTTGGGAACAATAATGACGATTACTTATTTGGTATTGAAATTCCTGAGCGAATGT  325
            ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  85   ACAGTTTTGGGGACTATAATGACGATTACTTATTTGGTATTGAAATTCCTGAGCGAATGT  144

Query  326  GACATGGAGGATGACACACAGAGGCTAC--C-ATTGGTGGCAGAAGAAGAAGTC-ACCAC  381
            |||||||||||||||||| |||||||||  | |||||||||||||||||| ||| || ||
Sbjct  145  GACATGGAGGATGACACAGAGAGGCTACTACCATTGGTGGCAGAAGAAGAGGTCCAC-AC  203

Query  382  CGATTGGACGCCGCCGTTGATCAATGAGTCGTT-GGAGGTAACGGGGAAGGGAGATGTAG  440
            || ||||||||||   |||||||| ||||| || ||||||||| ||||||||||||||||
Sbjct  204  CGTTTGGACGCCG---TTGATCAACGAGTC-TTCGGAGGTAACCGGGAAGGGAGATGTAG  259

Query  441  AAACGGCGTCGTTTAGCTCGTCGGATGATGTGGACTACTCGACACTGTGTGTTATATGCT  500
            |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  260  AAACAGCGTCGTTTAGCTCGTCGGATGATGTGGACTACTCGACATTGTGTGTTATATGTT  319

Query  501  TCGAGGAACGTAGAAACTGTTTCTTTGTACCGTGTGGTCACTCTGCCACTTGTCGCGGCT  560
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  320  TCGAGGAACGTAGAAACTGTTTCTTTGTACCGTGCGGTCACTCTGCCACTTGTCGTGGCT  379

Query  561  GTGCTCAAAGGATCTTGTCGGAAGAAAGTAAGGTGTGTCCGATTTGCCGAAGGGTGATAC  620
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct  380  GTGCTCAAAAGATCTTGTCGGAAGAAAATAAGGTGTGTCCGATTTGCCGAAGGGTAATAC  439

Query  621  GCAAATCAAAGAGATTAGTGTTGAAAAAGCTTTGA  655
            |||| || ||||||||||||||||| |||||||||
Sbjct  440  GCAAGTCTAAGAGATTAGTGTTGAAGAAGCTTTGA  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35034960723


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5