BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24210.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492439 jgi|Araly1|492439|fgenesh2_kg.7__1872__AT4G24210.1 881 0.0
> Ahg492439 jgi|Araly1|492439|fgenesh2_kg.7__1872__AT4G24210.1
Length=817
Score = 881 bits (477), Expect = 0.0
Identities = 634/705 (90%), Gaps = 30/705 (4%)
Strand=Plus/Plus
Query 44 ttttttCTCAATCTCTCCTCTCAAATCAAACAACTTTGATTGATCTTCGC-AATCGATTC 102
||||||||| |||||||||||||||||||||||| | |||||||||| |||| ||||
Sbjct 1 TTTTTTCTCCATCTCTCCTCTCAAATCAAACAAC--T--CTGATCTTCGCTAATCAATTC 56
Query 103 CACATGAAGCGCAGTACTACCGACTCTGATTTGGCCGGTGATGCTCACAACGAGACAAAC 162
||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||| ||
Sbjct 57 CACATGAAGCGCAGTGCTACCGACTCTGATCTGGACGGTGATGCTCATAACGAGACACAC 116
Query 163 AAGAAGATGAAGAGTAC--A-GAGGAAGA---AGAAATCGGATTCTCCAATTTAGACGAG 216
||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 117 AAGAAGATGAAGAGTACGGAGGAAGAAGATTCAGAAATCGGATTCTCCAATTTAGACGAG 176
Query 217 AATCTAGTGTACGAGGTGTTGAAACACGTCGACGCAAAGACCTTAGCTATGTCATCTTGC 276
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 177 AATCTAGTGTACGAGGTATTGAAGCACGTAGACGCAAAGACCTTAGCTATGTCTTCTTGC 236
Query 277 GTGAGCAAGATCTGGCACAAAACGGCACAAGACGAGCGGCTTTGGGAGCTGATCTGTACT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTGAGCAAGATCTGGCACAAAACGGCACAAGACGAGCGGCTTTGGGAGCTGATCTGTACT 296
Query 337 CGTCACTGGACTAACATCGGCTGCGGGCAGAACCAGCTCAGATCTGTTGTGTTGGCGCTT 396
|||||||||||||||||||||||||| || ||||||||||||||||| || ||||| |||
Sbjct 297 CGTCACTGGACTAACATCGGCTGCGGCCAAAACCAGCTCAGATCTGTGGTCTTGGCCCTT 356
Query 397 GGTGGCTTCCGAAGACTCCACTCTCTTTACCTCTGGCCTCTCTCTAAACCCAATCCGCGT 456
|||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 357 GGTGGCTTCCGACGTCTCCACTCACTTTACCTCTGGCCTCTCTCTAAACCTAATCCGCGT 416
Query 457 GCTAGGTTCGGTAAGGACGAGCTTAAACTCACTCTTTCTCTTCTCTCAATTCGATACTAC 516
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTAGATTCGGTAAAGACGAGCTTAAACTCACTCTTTCTCTTCTCTCAATTCGATACTAT 476
Query 517 GAGAAGATGAGTTTCACTAAGAGACCTCTTCCAGAA-TCCAAATAATTGACT-ACAAATT 574
||||||||||||||||||||||||||||| ||| || || || ||||| ||| |||||||
Sbjct 477 GAGAAGATGAGTTTCACTAAGAGACCTCTCCCA-AACTCTAATTAATT-ACTTACAAATT 534
Query 575 ATTAGAGTTT----GGTTTTGGAGTTTGTGTATTTGGAGTTTGTTGATTGGTAAGTC--A 628
|||| |||| |||||| ||||||| |||||||||||||||||| ||||| |
Sbjct 535 CTTAGGGTTTATTTGGTTTTATCTTTTGTGTGTTTGGAGTTTGTTGATTGATAAGTGTGA 594
Query 629 -G--ATGTGATGTTCAATGCTGGCAATAAAATTTGTTGGTATCCATAAGCCAGACTGTTA 685
| |||||||| |||| |||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 595 CGTGATGTGATGCTCAAAGCTGGCAATAAAATTTGTTG-TATTCATA-GCCAGACTGTTA 652
Query 686 GCAACAGTTGT-GTTCTGTAATAATAG-AG-GG-TGATGAGAATT 726
||||||||||| |||||||||||||| || || |||||||||||
Sbjct 653 GCAACAGTTGTTGTTCTGTAATAATAATAGAGGCTGATGAGAATT 697
Score = 172 bits (93), Expect = 3e-42
Identities = 113/122 (93%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 767 TATCAAATGTGATTCGATTTTGTTG-TAATGGTTCTGTCGTGAAGTTAAGTTGGTCCGTA 825
|||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 697 TATCAAATATGATTCGATTTTGTTGTTAATTGTTGTGTCGTGAAGTTAAGTTGGTCCGTA 756
Query 826 GTTGGACAATGATTGTAACAAAATCGATTCGTGATCCA-GTTTGGTAAGATTAAGAACTG 884
|||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||| |
Sbjct 757 GTTGGACAATGATTGTAACAAAATTGATTCGTGATCCAAGTT-GATAAGATTAAGAACGG 815
Query 885 TT 886
||
Sbjct 816 TT 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5