BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24220.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945681 jgi|Araly1|945681|scaffold_701910.1 1882 0.0
Ahg492432 jgi|Araly1|492432|fgenesh2_kg.7__1865__AT4G24230.1 99.0 1e-19
> Ahg945681 jgi|Araly1|945681|scaffold_701910.1
Length=1210
Score = 1882 bits (1019), Expect = 0.0
Identities = 1134/1191 (95%), Gaps = 1/1191 (0%)
Strand=Plus/Plus
Query 272 AAAATGAGTTGGTGGTGGGCTGGCGCCATCGGAGCTGCCAAGAAGAAACTCGACGAAGAT 331
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 21 AAAATGAGTTGGTGGTGGGCTGGCGCCATCGGAGCTGCAAAGAAGAAACTAGATGAAGAT 80
Query 332 GAACCATCACAAAGCTTCGAGAGCGTCGCTCTCATCATCGGCGTTACTGGAATCGTCGGA 391
|| || || ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 81 GAGCCGTCGCAAAGCTACGAAAGCGTCGCTCTCATCATCGGCGTTACTGGAATCGTCGGA 140
Query 392 AACAGCTTGGCGGAGATTCTCCCTCTTTCCGACACACCCGGTGGTCCATGGAAAGTCTAC 451
|||||||||||||||||||||||||||||||| || ||||| ||||| |||||||| |||
Sbjct 141 AACAGCTTGGCGGAGATTCTCCCTCTTTCCGATACTCCCGGCGGTCCCTGGAAAGTTTAC 200
Query 452 GGCGTCGCTCGTCGTCCTCGTCCTACCTGGAACGCCGATCATCCGATCGATTACATCCAG 511
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 201 GGCGTTGCTCGTCGTCCTCGACCCACCTGGAACGCCGATCATCCGATCGATTACATCCAG 260
Query 512 TGCGATGTCTCCGACGCCGAAGACACAAGATCCAAGCTTTCCCCTTTAACCGATGTCACA 571
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 261 TGCGATGTCTCCGACGCCGAAGACGCAAGATCCAAGCTTTCCCCTTTAACCGATGTCACT 320
Query 572 CATGTCTTCTACGTCACCTGGACCAATCGTGAATCGGAAAGTGAAAACTGTGAAGCAAAT 631
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| || || |||
Sbjct 321 CATGTCTTCTACGTGACCTGGACCAACCGTGAATCGGAGAGTGAAAACTGCGAGGCTAAT 380
Query 632 GGCTCAATGCTCCGTAACGTTCTCCAAGCGATTATCCCATACGCGCCAAATCTCCGACAT 691
||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||
Sbjct 381 GGCTCAATGCTCCGTAACGTTCTCCGAGCGATTGTCCCAAACGCGCCAAATCTCCGGCAC 440
Query 692 GTTTGTCTCCAGACAGGGACAAAGCACTACCTTGGCCCTTTCACCAACGTTGACGGACCT 751
|||||||||||||| ||||||||||| ||| |||||||||||| |||| |||||||||||
Sbjct 441 GTTTGTCTCCAGACGGGGACAAAGCATTACGTTGGCCCTTTCAGCAACCTTGACGGACCT 500
Query 752 CGTCACGATCCACCGTTCACTGAGGATATGCCGAGATTGCAGATCCAGAATTTCTATTAT 811
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CGTCATGATCCACCGTTCACTGAGGATATGCCGAGATTGCAGATCCAGAATTTCTATTAT 560
Query 812 ACCCAAGAGGATATTCTGTTTGAAGAGATCAAGAAGATAGAAACCGTGACGTGGTCTATC 871
|| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 561 ACTCAAGAGGATGTTCTGTTTGATGAGATCAAGAAGATAGAAACCGTGACGTGGACTATC 620
Query 872 CACAGACCAAACATGATCTTTGGGTTCTCTCCTTATAGTTTGATGAACATTGTTGGGACT 931
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 621 CACAGACCAAACACGATCTTTGGGTTCTCTCCTTATAGTCTGATGAACATTGTTGGGACT 680
Query 932 CTCTGTGTCTATGCAGCGATATGTAAGCATGAAGGGTCTCCGTTGTTGTTTCCTGGGAGC 991
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 681 CTTTGTGTCTATGCAGCGATCTGTAAGCATGAAGGGTCTCCGTTGTTGTTTCCTGGGAGC 740
Query 992 AAGAAAGCTTGGGAAGGGTTCATGACGGCTTCTGACGCGGATTTGATTGCGGAGCAGCAG 1051
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 741 AAGAAAGCTTGGGAAGGGTTCACGACGGCTTCTGACGCGGACTTGATTGCGGAGCAGCAG 800
Query 1052 ATTTGGGCGGCGGTTGATCCGTATGCGAAGAACGAGGCGTTTAACTGCAACAATGCTGAT 1111
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ATTTGGGCTGCGGTTGATCCGTATGCGAAGAACGAGGCGTTTAACTGCAACAATGCTGAT 860
Query 1112 ATCTTCAAGTGGAAGCATCTGTGGAAGATTCTAGCTGAGCAGTTTGGGATTGAGGAGTAT 1171
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 861 ATCTTCAAGTGGAAGCATCTGTGGAAGATTCTAGCTGAGCAATTTGGGATTGAGGAGTAT 920
Query 1172 GGATTTGAGGAAGGGAAGAATTTGGGGTTGGTGGAGATGATGAAAGGGAAAGAGAGAGTG 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 GGATTTGAGGAAGGGAAGAATTTGGGGTTGGTGGAGATGATGAAAGGGAAAGAGAGAGTG 980
Query 1232 TGGGAGGAGATGGTTAAGGAGAATCAATTGCAAGAGAAGAAGCTTGAGGAAGTTGGTGTG 1291
||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 981 TGGGAGGAGATGGTTAAAGAGAATCAGTTGCAGGAGAAGAAGCTTGAAGAAGTTGGTGTG 1040
Query 1292 TGGTGGTTTGCTGATGTTATACTTGGAGTTGAAGGAATGATTGATAGTATGAACAAGAGT 1351
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1041 TGGTGGTTTGCTGATGTTGTACTTGGAGTTGATGGACTGATTGATAGTATGAACAAGAGT 1100
Query 1352 AAGGAATATGGCTTCCTTGGTTTCAGGAACTCCAACAACTCTTTTATCTCTTGGATTGAC 1411
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AAGGAACATGGCTTCCTTGGTTTCAGGAACTCCAACAACTCTTTTATCTCTTGGATTGAC 1160
Query 1412 AAGTACAAGGCGTTCAAGATCGTACCTTGATTCCAAAACATACTTGGATGT 1462
||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1161 AAGTACAAGGCGTTCAAGATCGTGCCTTGATTCCAAA-CATACTTGGATGT 1210
> Ahg492432 jgi|Araly1|492432|fgenesh2_kg.7__1865__AT4G24230.1
Length=1651
Score = 99.0 bits (53), Expect = 1e-19
Identities = 104/127 (82%), Gaps = 9/127 (7%)
Strand=Plus/Minus
Query 1602 ATAGTTTTCAATTTTTAAATA---TCGTTACAAGTTGTAATGGAAAGATATTGGACAATG 1658
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1651 ATAGTTTTCACTTTTCAAATATCGTCGTTACAAGTTGTAATGGAAAGATATTGGACAATG 1592
Query 1659 GTGCAGT-GTCATAAGGACAAAGAG-CTTTACAGGC-TAATGGAAATACCAGATTCTGTG 1715
|||| | ||| |||||| ||| || || || | | ||| | | ||| |||||||||
Sbjct 1591 GTGCTTTTGTCTTAAGGAGAAATAGTCTGTATTGTCCTAA---ACACACCGGATTCTGTG 1535
Query 1716 TTTTGCA 1722
|||||||
Sbjct 1534 TTTTGCA 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5