BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24230.6 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg492432 jgi|Araly1|492432|fgenesh2_kg.7__1865__AT4G24230.1 1495 0.0 Ahg942663 jgi|Araly1|942663|scaffold_603207.1 313 3e-84 Ahg891364 jgi|Araly1|891364|Al_scaffold_0007_3350 276 3e-73 Ahg913777 jgi|Araly1|913777|Al_scaffold_0001_4031 226 3e-58 Ahg922773 jgi|Araly1|922773|scaffold_104054.1 224 1e-57 Ahg916187 jgi|Araly1|916187|Al_scaffold_0008_938 217 2e-55 > Ahg492432 jgi|Araly1|492432|fgenesh2_kg.7__1865__AT4G24230.1 Length=1651 Score = 1495 bits (809), Expect = 0.0 Identities = 1169/1331 (88%), Gaps = 72/1331 (5%) Strand=Plus/Plus Query 1 ATGGAGGTTTTCTTAGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTT 60 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 ATGGAGTTTTTCTTCGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTT 108 Query 61 TTGGCCAAGCTCGTTTCTGTTGCTACGGTGGAGAAC----G--A---TTTGAGTTCTGAT 111 |||||||||| || |||||||| |||||||||||| | | ||||||||||||| Sbjct 109 GTGGCCAAGCTGGTCTCTGTTGCCACGGTGGAGAACAGAGGAAACGGTTTGAGTTCTGAT 168 Query 112 CAGCCGCTCAAGCCCGAGATC-G-GT--GT--CG-G--TGTTACAGAGGATGTTCGTTTT 162 ||| || |||| ||||||| | || || | | |||||| ||||| ||||||||| Sbjct 169 CAGGCGGAGAAGCACGAGATCGGCGTCGGTGATGAGTTTGTTACGGAGGAGGTTCGTTTT 228 Query 163 GGTATGAAGATGGATGCTCGTGTTCTCGAAAGCCAGAGGAATTTCCAAGTTGTTGATGAG 222 ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || || Sbjct 229 GGTATGAAGATGGATGCTCGTGTGCTCGAAAGCGAGAGGAATTTCCAAGTTGTGGAGGAT 288 Query 223 AATGTGGAACTTGTCGATCGGTTTCTTAGCGAAGAAGCTGATCGAGTTTATGAAGTCGAT 282 |||||||||||||| ||||||||| | | |||||||||||||||||||||||||| Sbjct 289 AATGTGGAACTTGTGGATCGGTTT-GAAAC--CGAAGCTGATCGAGTTTATGAAGTCGAA 345 Query 283 GAAGCTGTTAC-TGGAAACGCTAAAATCTGTGGTGACCGTGAAGCTGAGTCCTCGGCTGC 341 ||||||| ||| | ||||||||||||| | ||| |||||||||||||||||||| |||| Sbjct 346 GAAGCTGCTACAT-TAAACGCTAAAATCCGAGGTAACCGTGAAGCTGAGTCCTCGCCTGC 404 Query 342 AGCCTCGTCGGAAAATTATGTGATCGCCGAGGAGGTGATCTTAGTTCGAGGACAGGACGA 401 || ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| | Sbjct 405 AGTCTCGTCGGAAAATAATGTGATCGCCGAGGAGGTGA---TAGTTCGTGGACAGGACAA 461 Query 402 ACAGAGCGAC----T--CGG---------CTGAAGCTGAGTCCATTTCTTCTGTCTCGCC 446 |||||||||| | || | |||||||||| || ||| || |||||||| Sbjct 462 ACAGAGCGACGAGTTGATGGTTCCAACCACGGAAGCTGAGTTCACTTCGTCAGTCTCGCC 521 Query 447 GGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAAGTAACAGAATTAGG 506 |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 522 GGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAACCAATAGAATTAGG 581 Query 507 AAGAAGTGGTTGCGTAGAAAACGAAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGA 566 |||||||| |||||||||||| |||||| |||||||||||||| |||||||||||||||| Sbjct 582 AAGAAGTGCTTGCGTAGAAAAGGAAGAAGGTGGTGGAGATGTCGTAGTCGCTGAATCTGA 641 Query 567 GGAGGTTAGAGTTGAAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAA 626 |||| |||| |||||| |||||||| ||| ||||||||||||||| ||||||||||||| Sbjct 642 GGAGCTTAGGGTTGAAGAGAGTAGTGATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAA 701 Query 627 TGAAGAGAAAACAGAGTTGACTATT---GAAGA--A-GATGATGATTGGGAAGGAATTGA 680 ||||||||| ||||| ||||||||| ||||| | ||||||||||||||||||||||| Sbjct 702 TGAAGAGAAGACAGACTTGACTATTGAAGAAGATGATGATGATGATTGGGAAGGAATTGA 761 Query 681 GAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAA 740 ||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| Sbjct 762 GAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGCAAAACTCATGGAAGAATCCGGGAA 821 Query 741 AGCTG-AAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAAGATCGCCA 799 || || |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 822 AG-TGGAAGAAATTGGTGTTGAAGCTAAGATGGAGTTGTTCGGCCTTCACAAGATCGCCA 880 Query 800 CTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCCAAAT 859 |||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| Sbjct 881 CTGAAGGGTCATGTAGGGAGACACAACCTATGGCCGTCATGGTCTCTGCTCGTGCCAAAT 940 Query 860 GGAATGCGTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCAATGGAGCAGTATCTTG 919 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 941 GGAATGCCTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCCATGGAGCAGTATCTTG 1000 Query 920 CACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTGTAGGGAAGATGT 979 |||||||||||||||| ||||||||||| | ||| ||| || |||||||||||||||||| Sbjct 1001 CACTTGTCTCAAAGGAGATCCCTGGTTTTATGAATGCTAGTTATACTGTAGGGAAGATGT 1060 Query 980 CAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAGGATCATTAGAAGATCCGACCA 1039 |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1061 CAGAAATGGAAACCGCTGTTGGCTTACCTCCTAATTCAGGATCATTAGAAGATCCGACCA 1120 Query 1040 ACTTAGTCACAACTGGTGTTGATGAATCCAGCAAAAATGAAATAGTTTCAGGGGAGAGGT 1099 |||||| |||||||||||||||||||||||||||||||| | || |||| ||||||| Sbjct 1121 ACTTAGACACAACTGGTGTTGATGAATCCAGCAAAAATG---T--TT-CAGGAGAGAGGT 1174 Query 1100 GAATCCAGTGCTTAAGCAGGCAAGGCTTGAAGGAGGACTTTGGGATAACAAAGGCAAATC 1159 |||||||||| |||||||| | | |||| || ||||||||||||||||||| Sbjct 1175 GAATCCAGTGTTTAAGCAG-C----C---AAGG----CT--GGGATAACAAAGGCAAATC 1220 Query 1160 TATTCTTTTGCATATAAGTAtttttttAGGTGCATCT-GGAAACCAAAACACTTAAATAT 1218 ||||||||||||||||||||||||| ||| | | |||||||||||||||||| ||| Sbjct 1221 TATTCTTTTGCATATAAGTATTTTTGAAGGAGT-TGAAGGAAACCAAAACACTTAATTAT 1279 Query 1219 ATGTATACATATGTGCGCGAGGACTGGTTGATTTCTAGTGCATTGATTATGCAAAGACCT 1278 ||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| Sbjct 1280 ATGTATACATATGTGCGCGAGGATTGGTTGATTTCTAGTGCATTGATAATGCTAAGACCT 1339 Query 1279 -ATGATTTATG 1288 |||||||||| Sbjct 1340 TATGATTTATG 1350 > Ahg942663 jgi|Araly1|942663|scaffold_603207.1 Length=557 Score = 313 bits (169), Expect = 3e-84 Identities = 213/233 (91%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 523 GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTG 580 ||||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || ||| Sbjct 327 GAAAAGGAAAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTG 385 Query 581 AAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAG 640 || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 386 AAGAGAGTAGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAG 445 Query 641 AGTTGACTATTGAAGAAGATGATGAT--T-GGGAAGGAATTGAGAGGAGTGAACTTGAGA 697 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 446 AGTTGACTATTGAAGAAGATGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGA 505 Query 698 AAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAAAGCTG-AAGA 749 |||||||||| ||||||| ||| |||||||||||||||||||||| || |||| Sbjct 506 AAGCCTTTGCAGCTGCTGCAAAACTTTTGGAAGAATCCGGGAAAG-TGGAAGA 557 > Ahg891364 jgi|Araly1|891364|Al_scaffold_0007_3350 Length=459 Score = 276 bits (149), Expect = 3e-73 Identities = 184/200 (92%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 530 AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTGAAAAGAGT 588 ||||| ||||| |||||||| |||||||||||||||||||| ||| || ||||| ||||| Sbjct 140 AAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTGAAGAGAGT 198 Query 589 AGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACT 648 ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 199 AGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACT 258 Query 649 ATTGAAG-A-A-GATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTT 705 ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 ATTGAAGAAGACGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTT 318 Query 706 GCGGCTGCTGTAAATCTTTT 725 || ||||||| ||| ||||| Sbjct 319 GCAGCTGCTGGAAAACTTTT 338 Score = 100 bits (54), Expect = 2e-20 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 796 GCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCC 855 ||||||||||||||||||||||||||||| || |||||||||||| || ||||||||||| Sbjct 342 GCCACTGAAGGGTCATGTAGAGAGGCACAGCCCATGGCCGTCATGGTCACTGCTCGTGCC 401 Query 856 AAATGG 861 |||||| Sbjct 402 AAATGG 407 > Ahg913777 jgi|Araly1|913777|Al_scaffold_0001_4031 Length=330 Score = 226 bits (122), Expect = 3e-58 Identities = 155/170 (91%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 523 GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTG 580 ||||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || ||| Sbjct 132 GAAAAGGAAAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTG 190 Query 581 AAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAG 640 || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 191 AAGAGAGTAGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAG 250 Query 641 AGTTGACTATTGAAGAAGA---TGATGATTGGGAAGGAATTGAGAGGAGT 687 ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 251 AGTTGACTATTGAAGAAGACGATGATGATTGGGAAGGAATTGAGAGGAGT 300 > Ahg922773 jgi|Araly1|922773|scaffold_104054.1 Length=640 Score = 224 bits (121), Expect = 1e-57 Identities = 151/165 (92%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 523 GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTAGAGTTGA 581 ||||| | ||||| |||||||||||||| |||||||||||||||||||| |||| ||||| Sbjct 323 GAAAAGGAAAGAAGGTGGTGGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGGTTGA 382 Query 582 AAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGA 641 | |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 383 AGAGAGTAGTAATACAGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAGA 442 Query 642 GTTGACTATTGAAGAAGATGATGAT--T-GGGAAGGAATTGAGAG 683 ||||||||||||||||||||||||| | |||||||||||||||| Sbjct 443 GTTGACTATTGAAGAAGATGATGATGATTGGGAAGGAATTGAGAG 487 > Ahg916187 jgi|Araly1|916187|Al_scaffold_0008_938 Length=579 Score = 217 bits (117), Expect = 2e-55 Identities = 168/190 (88%), Gaps = 13/190 (7%) Strand=Plus/Plus Query 673 GGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAA 732 ||||||||||||||||||||||||||||||||||| ||||||| | ||| | Sbjct 342 GGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCAGCTGCTG----------GAAAG-A 390 Query 733 TCCGGGAAAGCT-GAAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAA 791 |||||||||| | |||||| |||||||||| ||||||||||||||||| ||||||||||| Sbjct 391 TCCGGGAAAG-TGGAAGAAGTTGGTGCTGATGCTAAGATGGAGTTGTTCGGCCTTCACAA 449 Query 792 GATCGCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCG 851 ||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||| Sbjct 450 GATCGCCACTGAAGGGTCATGTAGAGAGGCACAGCCCATGGCCGTCATGGTCACTGCTCG 509 Query 852 TGCCAAATGG 861 |||||||||| Sbjct 510 TGCCAAATGG 519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5