BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24230.6
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492432 jgi|Araly1|492432|fgenesh2_kg.7__1865__AT4G24230.1 1495 0.0
Ahg942663 jgi|Araly1|942663|scaffold_603207.1 313 3e-84
Ahg891364 jgi|Araly1|891364|Al_scaffold_0007_3350 276 3e-73
Ahg913777 jgi|Araly1|913777|Al_scaffold_0001_4031 226 3e-58
Ahg922773 jgi|Araly1|922773|scaffold_104054.1 224 1e-57
Ahg916187 jgi|Araly1|916187|Al_scaffold_0008_938 217 2e-55
> Ahg492432 jgi|Araly1|492432|fgenesh2_kg.7__1865__AT4G24230.1
Length=1651
Score = 1495 bits (809), Expect = 0.0
Identities = 1169/1331 (88%), Gaps = 72/1331 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGTTTTCTTAGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTT 60
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 ATGGAGTTTTTCTTCGAGATGCTTCTCACGGCGGTTGTTGCTCTCTTGTTTTCTTTCCTT 108
Query 61 TTGGCCAAGCTCGTTTCTGTTGCTACGGTGGAGAAC----G--A---TTTGAGTTCTGAT 111
|||||||||| || |||||||| |||||||||||| | | |||||||||||||
Sbjct 109 GTGGCCAAGCTGGTCTCTGTTGCCACGGTGGAGAACAGAGGAAACGGTTTGAGTTCTGAT 168
Query 112 CAGCCGCTCAAGCCCGAGATC-G-GT--GT--CG-G--TGTTACAGAGGATGTTCGTTTT 162
||| || |||| ||||||| | || || | | |||||| ||||| |||||||||
Sbjct 169 CAGGCGGAGAAGCACGAGATCGGCGTCGGTGATGAGTTTGTTACGGAGGAGGTTCGTTTT 228
Query 163 GGTATGAAGATGGATGCTCGTGTTCTCGAAAGCCAGAGGAATTTCCAAGTTGTTGATGAG 222
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||
Sbjct 229 GGTATGAAGATGGATGCTCGTGTGCTCGAAAGCGAGAGGAATTTCCAAGTTGTGGAGGAT 288
Query 223 AATGTGGAACTTGTCGATCGGTTTCTTAGCGAAGAAGCTGATCGAGTTTATGAAGTCGAT 282
|||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct 289 AATGTGGAACTTGTGGATCGGTTT-GAAAC--CGAAGCTGATCGAGTTTATGAAGTCGAA 345
Query 283 GAAGCTGTTAC-TGGAAACGCTAAAATCTGTGGTGACCGTGAAGCTGAGTCCTCGGCTGC 341
||||||| ||| | ||||||||||||| | ||| |||||||||||||||||||| ||||
Sbjct 346 GAAGCTGCTACAT-TAAACGCTAAAATCCGAGGTAACCGTGAAGCTGAGTCCTCGCCTGC 404
Query 342 AGCCTCGTCGGAAAATTATGTGATCGCCGAGGAGGTGATCTTAGTTCGAGGACAGGACGA 401
|| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 405 AGTCTCGTCGGAAAATAATGTGATCGCCGAGGAGGTGA---TAGTTCGTGGACAGGACAA 461
Query 402 ACAGAGCGAC----T--CGG---------CTGAAGCTGAGTCCATTTCTTCTGTCTCGCC 446
|||||||||| | || | |||||||||| || ||| || ||||||||
Sbjct 462 ACAGAGCGACGAGTTGATGGTTCCAACCACGGAAGCTGAGTTCACTTCGTCAGTCTCGCC 521
Query 447 GGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAAGTAACAGAATTAGG 506
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 522 GGAAAACGTGGTAGCGGAGGAGATTAAGAGTCAAGGACAAGAGGAACCAATAGAATTAGG 581
Query 507 AAGAAGTGGTTGCGTAGAAAACGAAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGA 566
|||||||| |||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 582 AAGAAGTGCTTGCGTAGAAAAGGAAGAAGGTGGTGGAGATGTCGTAGTCGCTGAATCTGA 641
Query 567 GGAGGTTAGAGTTGAAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAA 626
|||| |||| |||||| |||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 642 GGAGCTTAGGGTTGAAGAGAGTAGTGATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAA 701
Query 627 TGAAGAGAAAACAGAGTTGACTATT---GAAGA--A-GATGATGATTGGGAAGGAATTGA 680
||||||||| ||||| ||||||||| ||||| | |||||||||||||||||||||||
Sbjct 702 TGAAGAGAAGACAGACTTGACTATTGAAGAAGATGATGATGATGATTGGGAAGGAATTGA 761
Query 681 GAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAA 740
||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 762 GAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGCAAAACTCATGGAAGAATCCGGGAA 821
Query 741 AGCTG-AAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAAGATCGCCA 799
|| || |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 822 AG-TGGAAGAAATTGGTGTTGAAGCTAAGATGGAGTTGTTCGGCCTTCACAAGATCGCCA 880
Query 800 CTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCCAAAT 859
|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 881 CTGAAGGGTCATGTAGGGAGACACAACCTATGGCCGTCATGGTCTCTGCTCGTGCCAAAT 940
Query 860 GGAATGCGTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCAATGGAGCAGTATCTTG 919
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 941 GGAATGCCTGGCAAAAACTTGGAAACATGAGTCAAGAAGAGGCCATGGAGCAGTATCTTG 1000
Query 920 CACTTGTCTCAAAGGAAATCCCTGGTTTGACGAAAGCTGGTCATACTGTAGGGAAGATGT 979
|||||||||||||||| ||||||||||| | ||| ||| || ||||||||||||||||||
Sbjct 1001 CACTTGTCTCAAAGGAGATCCCTGGTTTTATGAATGCTAGTTATACTGTAGGGAAGATGT 1060
Query 980 CAGAAATGGAAACCTCTGTTGGCTTGCCTCCGAATTCAGGATCATTAGAAGATCCGACCA 1039
|||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1061 CAGAAATGGAAACCGCTGTTGGCTTACCTCCTAATTCAGGATCATTAGAAGATCCGACCA 1120
Query 1040 ACTTAGTCACAACTGGTGTTGATGAATCCAGCAAAAATGAAATAGTTTCAGGGGAGAGGT 1099
|||||| |||||||||||||||||||||||||||||||| | || |||| |||||||
Sbjct 1121 ACTTAGACACAACTGGTGTTGATGAATCCAGCAAAAATG---T--TT-CAGGAGAGAGGT 1174
Query 1100 GAATCCAGTGCTTAAGCAGGCAAGGCTTGAAGGAGGACTTTGGGATAACAAAGGCAAATC 1159
|||||||||| |||||||| | | |||| || |||||||||||||||||||
Sbjct 1175 GAATCCAGTGTTTAAGCAG-C----C---AAGG----CT--GGGATAACAAAGGCAAATC 1220
Query 1160 TATTCTTTTGCATATAAGTAtttttttAGGTGCATCT-GGAAACCAAAACACTTAAATAT 1218
||||||||||||||||||||||||| ||| | | |||||||||||||||||| |||
Sbjct 1221 TATTCTTTTGCATATAAGTATTTTTGAAGGAGT-TGAAGGAAACCAAAACACTTAATTAT 1279
Query 1219 ATGTATACATATGTGCGCGAGGACTGGTTGATTTCTAGTGCATTGATTATGCAAAGACCT 1278
||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1280 ATGTATACATATGTGCGCGAGGATTGGTTGATTTCTAGTGCATTGATAATGCTAAGACCT 1339
Query 1279 -ATGATTTATG 1288
||||||||||
Sbjct 1340 TATGATTTATG 1350
> Ahg942663 jgi|Araly1|942663|scaffold_603207.1
Length=557
Score = 313 bits (169), Expect = 3e-84
Identities = 213/233 (91%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 523 GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTG 580
||||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || |||
Sbjct 327 GAAAAGGAAAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTG 385
Query 581 AAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAG 640
|| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 386 AAGAGAGTAGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAG 445
Query 641 AGTTGACTATTGAAGAAGATGATGAT--T-GGGAAGGAATTGAGAGGAGTGAACTTGAGA 697
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 446 AGTTGACTATTGAAGAAGATGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGA 505
Query 698 AAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAATCCGGGAAAGCTG-AAGA 749
|||||||||| ||||||| ||| |||||||||||||||||||||| || ||||
Sbjct 506 AAGCCTTTGCAGCTGCTGCAAAACTTTTGGAAGAATCCGGGAAAG-TGGAAGA 557
> Ahg891364 jgi|Araly1|891364|Al_scaffold_0007_3350
Length=459
Score = 276 bits (149), Expect = 3e-73
Identities = 184/200 (92%), Gaps = 5/200 (3%)
Strand=Plus/Plus
Query 530 AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTGAAAAGAGT 588
||||| ||||| |||||||| |||||||||||||||||||| ||| || ||||| |||||
Sbjct 140 AAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTGAAGAGAGT 198
Query 589 AGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACT 648
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 199 AGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAGAGTTGACT 258
Query 649 ATTGAAG-A-A-GATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTT 705
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATTGAAGAAGACGATGATGATTGGGAAGGAATTGAGAGGAGTGAACTTGAGAAAGCCTTT 318
Query 706 GCGGCTGCTGTAAATCTTTT 725
|| ||||||| ||| |||||
Sbjct 319 GCAGCTGCTGGAAAACTTTT 338
Score = 100 bits (54), Expect = 2e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 796 GCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCGTGCC 855
||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||
Sbjct 342 GCCACTGAAGGGTCATGTAGAGAGGCACAGCCCATGGCCGTCATGGTCACTGCTCGTGCC 401
Query 856 AAATGG 861
||||||
Sbjct 402 AAATGG 407
> Ahg913777 jgi|Araly1|913777|Al_scaffold_0001_4031
Length=330
Score = 226 bits (122), Expect = 3e-58
Identities = 155/170 (91%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 523 GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTA-GAGTTG 580
||||| | ||||| ||||| |||||||| |||||||||||||||||||| ||| || |||
Sbjct 132 GAAAAGGAAAGAAGGTGGTAGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGA-TTG 190
Query 581 AAAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAG 640
|| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 191 AAGAGAGTAGTAATACGGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAG 250
Query 641 AGTTGACTATTGAAGAAGA---TGATGATTGGGAAGGAATTGAGAGGAGT 687
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 251 AGTTGACTATTGAAGAAGACGATGATGATTGGGAAGGAATTGAGAGGAGT 300
> Ahg922773 jgi|Araly1|922773|scaffold_104054.1
Length=640
Score = 224 bits (121), Expect = 1e-57
Identities = 151/165 (92%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 523 GAAAACG-AAGAAAGTGGTGGAGATGTCTTAGTCGCTGAATCTGAGGAGGTTAGAGTTGA 581
||||| | ||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 323 GAAAAGGAAAGAAGGTGGTGGAGATGTCGTAGTCGCTGAATCTGAGGAGCTTAGGGTTGA 382
Query 582 AAAGAGTAGTAATATGGTGGAGGAGAGTGATGCTGAAGCAGAGAATGAAGAGAAAACAGA 641
| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 383 AGAGAGTAGTAATACAGTGGAGGAGAGTGAAACTGAAGCAGAGAATGAAGAGAAAACAGA 442
Query 642 GTTGACTATTGAAGAAGATGATGAT--T-GGGAAGGAATTGAGAG 683
||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 443 GTTGACTATTGAAGAAGATGATGATGATTGGGAAGGAATTGAGAG 487
> Ahg916187 jgi|Araly1|916187|Al_scaffold_0008_938
Length=579
Score = 217 bits (117), Expect = 2e-55
Identities = 168/190 (88%), Gaps = 13/190 (7%)
Strand=Plus/Plus
Query 673 GGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAA 732
||||||||||||||||||||||||||||||||||| ||||||| | ||| |
Sbjct 342 GGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCAGCTGCTG----------GAAAG-A 390
Query 733 TCCGGGAAAGCT-GAAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAA 791
|||||||||| | |||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 391 TCCGGGAAAG-TGGAAGAAGTTGGTGCTGATGCTAAGATGGAGTTGTTCGGCCTTCACAA 449
Query 792 GATCGCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCG 851
||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||
Sbjct 450 GATCGCCACTGAAGGGTCATGTAGAGAGGCACAGCCCATGGCCGTCATGGTCACTGCTCG 509
Query 852 TGCCAAATGG 861
||||||||||
Sbjct 510 TGCCAAATGG 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5