BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24240.1
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945679 jgi|Araly1|945679|scaffold_701908.1 1568 0.0
> Ahg945679 jgi|Araly1|945679|scaffold_701908.1
Length=1094
Score = 1568 bits (849), Expect = 0.0
Identities = 1009/1085 (93%), Gaps = 16/1085 (1%)
Strand=Plus/Plus
Query 161 TGAGATGACTGTTGAGCTGATGATGAGCAGCTACAGCGGCGGCGGAGGAGGAGGTGATGG 220
||||||||| |||||||||||||||||||||| | |||||| ||||||||||| || ||
Sbjct 19 TGAGATGACGGTTGAGCTGATGATGAGCAGCT--A-CGGCGGAGGAGGAGGAGGAGACGG 75
Query 221 TTTTCCTGCAATCGCCGCGGCGGCGAAAATGGAAGATACCGCTTTGAGAGAAGCTGCTTC 280
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||
Sbjct 76 TTTTCCTGCAATCGCCGCGGCGGCGAAACTGGAAGACACAGCTTTGAGAGAAGCTGCGTC 135
Query 281 TGCAGGGATTCACGGTGTGGAGGAGTTTCTTAAACTGATCGGTCAAAGTCAACAACCAAC 340
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 136 TGCAGGGATTCACGGTGTGGAGGAGTTTCTCAAACTCATCGGTCAAAGT---CAACCAAC 192
Query 341 GGAGAAGAGTCAGACGGAGATAACCGCGGTGACTGACGTCGCCGTTAACAGCTTCAAGAA 400
|||||| | ||||||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 193 GGAGAATAATCAGACGGAGATAACGGCGGTGACTGACGTCGCCGTAAACAACTTCAAGAA 252
Query 401 GGTCATTTCTCTACTCGGTAGATCTAGAACCGGACACGCTAGATTCAGACGAGCTCCCGC 460
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 253 GGTCATTTCTTTACTCGGTAGATCTAGAACTGGACACGCTAGATTCAGACGAGCCCCCAC 312
Query 461 GTCAACGCAAACGCCGTTTAAGCAAACGCCGGTGGTTGAGGAGGAGGTGGAGGTGGAGGA 520
| ||||||||||||||||| |||||| ||||| | ||||||||| || ||||||
Sbjct 313 AACGACGCAAACGCCGTTTAAACAAACGATGGTGG-T--GGAGGAGGT---GGCGGAGGA 366
Query 521 GAAGAAGCCAGAAACAAGCTCCGTGTTAACAAAACAGAAAACAGAGCAATATCA-CGGTG 579
||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | |
Sbjct 367 GAAGAAGCCAGAAACAACCTCCGTGCTAACAAAACAGAAAACAGAGCAATATAATC-ACG 425
Query 580 GTGGATCTGCGTTTAGAGTTTATTGTCCAACACCAATTCATCGTCGTCCTCCTCTATCAC 639
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 426 GTGGATCTGCGTTTAGAGTTTATTGTCCAACTCCAATTCATCGTCGTCCTCCTCTATCAC 485
Query 640 ACAATAACAACAACAATCAGAATCAAACAAAGAACGGTTCGTCTTCTTCATCTCCTCCGA 699
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 486 ACAACAACAACAACAATCAGAATCAGACAAAGAACGGTTCGTCTTCTTCGTCTCCTCCGA 545
Query 700 TGCTCG-CAAACGGAGCACCGTCAACGATAAACTTTGCGCCGTCACCACCAGTCTCAGCG 758
| || | |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 546 TACT-GACAAACGGAGCACCGTCAACGATAAACTTCGCGCCGTCACCACCAGTCTCAGCA 604
Query 759 ACGAACTCATTCATGTCTTCTCATAGATGTGACACCGATAGTACTCACATGTCATCAGGA 818
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 605 ACGAACTCATTCATGTCTTCTCATAGATGTGACACCGACAGTACTCAAATGTCATCAGGA 664
Query 819 TTCGAGTTCACTAACCCATCTCAGCTCTCTGGTTCGAGAGGTAAACCTCCTTTATCATCA 878
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 665 TTCGAGTTCACTAACCCATCTCAGGTCTCTGGTTCGAGAGGTAAACCTCCTCTATCATCA 724
Query 879 GCTTCGTTGAAGAGAAGATGTAATTCATCTCCCTCAAGCCGTTGCCATTGCTCCAAGAAA 938
||||| || |||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 725 GCTTCATTAAAGAGAAGATGTAACTCCTCTCCCTCTAGTCGTTGCCATTGCTCCAAGAAA 784
Query 939 AGGAAATCAAGAGTAAAAAGAGTGATTAGAGTTCCAGCAGTAAGTAGCAAAATGGCTGAT 998
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AGGAAATCAAGAGTGAAGAGAGTGATTAGAGTTCCAGCAGTAAGTAGCAAAATGGCTGAT 844
Query 999 ATACCATCAGATGAGTTTTCATGGAGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCT 1058
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 845 ATACCATCAGACGAGTTTTCGTGGAGAAAATATGGTCAAAAACCAATTAAAGGCTCTCCC 904
Query 1059 CATCCTCGGGGATATTACAAGTGCAGCAGTGTAAGAGGTTGTCCGGCGCGTAAGCATGTG 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CATCCTCGGGGATATTACAAGTGCAGCAGTGTAAGAGGTTGTCCGGCGCGTAAGCATGTG 964
Query 1119 GAGCGTGCACTAGATGATGCGATGATGCTAATCGTGACGTACGAAGGAGACCACAACCAT 1178
||||||||||| || |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 965 GAGCGTGCACTGGACGATGCGATGATGCTTATCGTGACGTACGAAGGAGACCACAGCCAT 1024
Query 1179 GCTTTGGTTCTCGAGACGACGACGATGAATCATGACAAAACTCTTTAGTTTCTCGAGTTT 1238
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1025 GCTTTGGTTCTCGAGACGACGACGACGAATCATGACAAAACTCTTTAATTTCTCGAGTTT 1084
Query 1239 GAGGG 1243
|||||
Sbjct 1085 GAGGG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56335472355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5