BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24260.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889734 jgi|Araly1|889734|Al_scaffold_0007_1720 2710 0.0
Ahg495032 jgi|Araly1|495032|fgenesh2_kg.8__848__AT5G49720.1 1160 0.0
> Ahg889734 jgi|Araly1|889734|Al_scaffold_0007_1720
Length=1863
Score = 2710 bits (1467), Expect = 0.0
Identities = 1739/1871 (93%), Gaps = 16/1871 (1%)
Strand=Plus/Plus
Query 1 ATGTACGGACGTGATCCATGGGGTGGTCCTCTAGAGATCAATGCGGCGGACTC-CATGAC 59
||||||||||||||||||||||| |||||||| |||||||||||||||||||| | | ||
Sbjct 1 ATGTACGGACGTGATCCATGGGGCGGTCCTCTGGAGATCAATGCGGCGGACTCTC-TCAC 59
Query 60 AGACGACGATCGTAGTCGAAACCTACAAGACCTTGACCGTGCGACTCCTTCGCGGCCACT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGACGACGATCGTAGTCGAAACCTACAAGACCTTGACCGTGCGACTCCTTCGCGGCCACT 119
Query 120 CGACGAAACGCAACAGAGTTGGCTTCTTGGACCAAAAGTGCTTAAGAAGAAAAAGTACGT 179
||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 120 CGACGAAACACAGCAGAGTTGGCTTCTTGGACCAAAAGTGCTGAAGAAGAAGAAGTACGT 179
Query 180 CGATCTTGGATGTATCTTAGTCAGCCGTAAGATCTTTCTTTGGACTCTTGGAACCATTGT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 CGATCTCGGATGTATCTTAGTCAGCCGTAAGATCTTTCTTTGGACTCTTGGAATCATTGT 239
Query 240 AGTAACTGCTCTTCTCTCTGGATTCATAACTTTGATCGTTAAAACATTGCCACACCAC-C 298
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 AGTTACCGCGCTTCTCTCTGGATTCATAACTTTGATCGTTAAAACTTTGCCACACCACAA 299
Query 299 ACCACAAGGAACCACCACCGGATAATTACACTATCGCTCTCCGTACAGCTCTCAAGTTCT 358
||| |||| ||||||||| |||||||||||| |||||||||| | ||||||||||||||
Sbjct 300 ACC-CAAGAAACCACCACTGGATAATTACACAATCGCTCTCCCCATAGCTCTCAAGTTCT 358
Query 359 TCAATGCTCAACAATCTGGGAAACTTCCAAAGAACATTTATAATGTATCA-TGGAGGCAT 417
|||||||||||||||||||||||||||||||||||| ||| ||| | |||||| |
Sbjct 359 TCAATGCTCAACAATCTGGGAAACTTCCAAAGAACAACAATAGCGTA-AAGTGGAGGGGT 417
Query 418 GATTCTTGTCTACAAGATGGTAAGGGAGATCCAGGACAATGCTACAAAGATTTGGTAGGA 477
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 418 GATTCTTGTCTACAAGATGGGAAGGGAGATCCAGGACAATACTACAAAGATTTGGTAGGA 477
Query 478 GGTTACTATGATGCTGGAGATTCTATCAAATTCAACTTCCCAATGTCTTATGCTATGACT 537
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 GGCTACTATGATGCTGGAGATTCTATTAAATTCAACTTCCCAATGTCTTATGCTATGACC 537
Query 538 ATGTTGAGCTGGAGTGTAATCGAATACAGCGCAAAGTACCAAGCTGCTGGCGAGCTTGAA 597
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 538 ATGTTGAGCTGGAGTGTAATCGAATACAGCGCAAAGTACGAAGCTGCTGGCGAGCTTGAC 597
Query 598 CATGTTAAAGAACTCATCAAATGGGGAACTGACTACTTTCTCAAGACTTTCAATAGTAGT 657
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 598 CATGTTAAAGAACTCATCAAATGGGGAACTGATTACTTTCTCAAGACCTTCAATAGTACT 657
Query 658 GCTGATA-ACATCTATGTTATGGTGGAACAGGTCGGATCTGGAGTTAGCGGTAGAGGAAG 716
||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 GCTGATATA-ATCTATGAAATGGTGGAACAGGTCGGATCTGGAGTTAGCGGTGGAGGAAA 716
Query 717 TGAATTGCACAATGACCATTACTGTTGGATGCGTCCTGAGGATATTCATTATAAAAGGAC 776
|| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 717 TGTATTGCATAATGACCATTACTGCTGGATGCGTCCTGAGGACATTCACTATAAAAGGAT 776
Query 777 TGTATCTCAATGTTACAGTAGCTGCTCTGATCTTGCTGCAGAGATGGCAGCTGCTCTGGC 836
||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 777 TGTATATCAATGCTACAGTAGCTGCTCGGATCTCGCTGCAGAGATGGCAGCTGCTCTGGC 836
Query 837 TTCTGCATCCATTGTATTCAAGGACAACAGATTATATTCGAAAAATCTTGTTCATGGTGC 896
||| || || |||||||||||||| ||||||||||||||| |||| |||||||| |||||
Sbjct 837 TTCAGCGTCTATTGTATTCAAGGATAACAGATTATATTCGGAAAAGCTTGTTCACGGTGC 896
Query 897 TAAGACGCTTTATAGGTTTGCAACTACTT-CTAGGAATAGATACAGTCA-AAATGGTAAA 954
||||||||| |||| |||||||||| || || ||||||||||||| | |||||||
Sbjct 897 TAAGACGCTCTATAAGTTTGCAACT-TTTAATAAGAATAGATACAGT-ACCCCTGGTAAA 954
Query 955 GAGTCTAGCAAATTTTATAACTCTAGCATGTTTGAGGATGAGCTATTATGGGGTGGTGCT 1014
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 955 GAGTCTAGCAAATTTTATAACTCTAGCATGTATGAGGATGAGCTATTATGGGGTGGGGCT 1014
Query 1015 TGGCTGTATTATGCTACTGGAAATGTAACTTATCTAGAACGAGTTACCAGTCACCACATG 1074
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1015 TGGTTGTATTATGCTACTGGAAATGTAACTTATCTAGAAGGAGTTACCAGTCACTACATG 1074
Query 1075 GCTGAGAAAGCTGGTGCCTTCGGGAATAGTCCTTATTATGGCGTATTTAGCTGGGACAAC 1134
|| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1075 GCCAAGAAAGCTGGTGCCTTCGGGAATAGCCCTTATTATGGCGTGTTTAGCTGGGACAAC 1134
Query 1135 AAGCTTCCAGGGGCTCAGTTGCTGTTAACACGGATGAGGCTGTTTCTGAGCCCTGGATAT 1194
||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 1135 AAGCTTCCAGGGGCTCAGTTGTTGTTAACCCGGATGAGGCTGTTTCTGAGTCCTGGATAT 1194
Query 1195 CCATATGAAGACATGT-TAAGCGAATTTCATAACCAAACAGGCAGAGTTATGTGCTCTTA 1253
||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCATATGAAGAAAT-TCTAAGCGCATTTCATAACCAAACAGGCAGAGTTATGTGCTCTTA 1253
Query 1254 CTTGCCTTATTACAAGAAATTTAACAGAACCAATGGAGGTTTGATTCAGTTGAACCATGG 1313
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1254 CTTGCCTTATTACAAAAAATTTAACAGAACCAGTGGAGGTTTGATTCAGTTGAACCATGG 1313
Query 1314 AGCTCCACAGCCTCTTCAATATGTTGCAAATGCGGCTTTCTTAGCGGCACTATTCAGTGA 1373
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1314 AGCTCCACAGCCTCTCCAATATGTGGCAAATGCGGCTTTCTTAGCGGCGCTATTCAGTGA 1373
Query 1374 TTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGA 1433
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1374 TTATCTAGATGCTGCTGATACTCCTGGATGGTACTGTGGTCCTAACTTCTATACTACTGA 1433
Query 1434 ATTCCTACGCAACTTTTCAAGATCGCAGATTGATTATATACTTGGTAAAAACCCTCGGAA 1493
||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1434 ATTACTACGCGACTTTTCAAGATCCCAGATTGATTACATACTTGGTAAAAACCCTCGGAA 1493
Query 1494 GATGAGTTATGTTGTGGGTTATGGGCAACGGTACCCGAAACAAGTGCATCACAGAGGAGC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GATGAGTTATGTTGTGGGTTATGGGCAACGGTACCCGAAACAAGTGCATCACAGAGGAGC 1553
Query 1554 TTCAATTCCAAAGAACATGAAAGAAACCTGCACAGGAGGATTTAAATGGAAAAAGAGCAA 1613
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 1554 TTCAATTCCAAAGAACAAGAGAGAAACCTGCACAGGAGGATTGAAATGGAAAAAGAGCAA 1613
Query 1614 AAA-GAATAACCCAAACGCTATTAATGGAGCAATGGTTGCTGGACCAGACAAGCATGACG 1672
||| | |||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1614 AAAAGG-TAACCCAAACACGATTGATGGAGCAATGGTTGCTGGACCAGACAAGCATGACG 1672
Query 1673 GATTCCACGACATACGAACAAATTACAACTATACAGAGCCGACTCTAGCGGGAAATGCTG 1732
||||||| || | || |||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 1673 GATTCCATGATGTTCGTTCAAACTACAACTACACAGAGCCGACTCTAGCGGGTAATGCGG 1732
Query 1733 GTCTAGTCGCCGCTCTGGTGGCTTTATCAGGGGAAAAAGCGGTTGGTGGTATTGACAAAA 1792
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1733 GTCTAGTCGCCGCTCTGGTGGCTTTATCAGGAGAGAAAGCTGTTGGTGGTATTGACAAAA 1792
Query 1793 ACACTATGTTCTCTGCCGTACCTCCATTGGTTATGGCTACACCGCCGCCTCCAGCACCTT 1852
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1793 ACACTATGTTCTCTGCCGTACCTCCATTGCCCATGGCTACACCGCCGCCTCCAGCACCTT 1852
Query 1853 GGACACCTTGA 1863
|||||||||||
Sbjct 1853 GGACACCTTGA 1863
> Ahg495032 jgi|Araly1|495032|fgenesh2_kg.8__848__AT5G49720.1
Length=2347
Score = 1160 bits (628), Expect = 0.0
Identities = 1513/1925 (79%), Gaps = 121/1925 (6%)
Strand=Plus/Plus
Query 1 ATGTACGGACGTGATCCATGGGGTGGTCC-TCTAGAGATCAATGCGGCGGACTCCATGAC 59
||||||||||| ||||||||||| ||||| | | |||||||| | || || ||| ||
Sbjct 111 ATGTACGGACGAGATCCATGGGGAGGTCCAT-TGGAGATCAACACTGCAGATTCCGCCAC 169
Query 60 AGACGACGATCGTAGTCGAAACCTACAA-GACCTT-GACCGTGCGACTCCTTCGCGGCCA 117
||||| ||||||||||| || | || || || || |||||| ||| ||| ||||||
Sbjct 170 CGACGATGATCGTAGTCGGAA-TTTGAACGA-TTTAGATCGTGCGGCTCTTTCACGGCCA 227
Query 118 CTCGACGAAACGCAACAGAGTTGGCTT-CTTGGACCAAAAGTGCTTAAGAAGAAAAAGTA 176
||||| || ||||| ||||||||| || ||||| |||| | || |||||||| |||||
Sbjct 228 CTCGATGAGACGCAGCAGAGTTGG-TTACTTGGTCCAACGGAGCAGAAGAAGAAGAAGTA 286
Query 177 CGTCGATCTTGGATGTATCT-TAGTCAGCCGTAAGATCTTTCTTTGGACTCTTGGAAC-C 234
|||||||| || ||||| | | || ||||| |||| ||| | |||||| |||| || |
Sbjct 287 TGTCGATCTCGGTTGTAT-TATCGTTAGCCGCCAGATATTTGTCTGGACTGTTGGTACTC 345
Query 235 ATTGTAGTAACTGCTCTT-CTCTCTGGATTCATAACTTTGATCGTTAAAACAT-TGCCAC 292
|||| | | || || ||| | ||||| || || |||||||||||||| | |||| |
Sbjct 346 -TTGTTGCCGCCGC-GTTACTCGCCGGATTTATCACCTTGATCGTTAAAAC-TGTGCCGC 402
Query 293 -ACCACCA-CCACAAGGA-ACCACCACCGGATAATTACACTA-TCGCTCTCCGTACAGCT 348
| || || || || || || || ||||||||||| || | | ||||| | || ||||
Sbjct 403 GA-CATCATCC-TAA-GAGTCCGCCGCCGGATAATTATAC-ATTAGCTCTTCATAAAGCT 458
Query 349 CTCAAGTTCTTCAATGCTCA-ACAATCTGGGAAACTT-CCAAAGAACATTTATAATGTAT 406
|| ||||||||||||||||| | ||||||||||| || |||||| || | |||| ||||
Sbjct 459 CTTAAGTTCTTCAATGCTCAGA-AATCTGGGAAA-TTGCCAAAG--CA-TAATAACGTAT 513
Query 407 CATGGAG-GCATGATTCTTGTCTACAAGATGGTAAGGGAGATCCAGGACA-ATGCTACAA 464
| ||||| | | ||||| | || |||||||| || || || ||||| | | ||| ||
Sbjct 514 CGTGGAGAG-GTAATTCTGGGCTTCAAGATGGGAAAGGTGAAACAGGA-AGCTTCTATAA 571
Query 465 AGATTTGGTAGGAGGTTACTATGATGCTGGAGATTCTATCAAATTCAACTTCCCAATGTC 524
||||||||| |||||||| ||||||||||| ||| ||||||| ||||| ||||| ||| |
Sbjct 572 AGATTTGGTGGGAGGTTATTATGATGCTGGTGATACTATCAAGTTCAATTTCCCCATGGC 631
Query 525 TTATGCTATGACTATGTTGAGCTGGAGTGTAATCGAATACAGCGC-AAAGTACCAAGCTG 583
|||||||||||||||||||||||||||||| || || || || || ||| ||| ||||||
Sbjct 632 TTATGCTATGACTATGTTGAGCTGGAGTGTTATTGAGTATAGTGCTAAA-TACGAAGCTG 690
Query 584 CTGGCGAGCTTGAA-CATGTTAAAGAACTCATCAAATGGGGAACTGACTACTTTCTCAAG 642
| || ||||| | |||||||| || || ||||||||||||||||| ||||||||||||
Sbjct 691 CGGGTGAGCTC-ACTCATGTTAAGGAGCTTATCAAATGGGGAACTGATTACTTTCTCAAG 749
Query 643 ACTTTCAATAGTAGTGCTGA-TAACATCT-ATGTTATGGTGGAACAGGTCGGATCTGG-A 699
||||||||||||| |||||| | ||| | ||| | | ||| |||||| ||||| || |
Sbjct 750 ACTTTCAATAGTACTGCTGACTC-CAT-TGATGATCTTGTGTCACAGGTTGGATCAGGGA 807
Query 700 GTTAGCGGTAG-A-GGAAGTG-A-ATTGCACAATGACCATTACTGTTGGATGCGTCCTGA 755
| | | | || | |||| | | || | ||||||||||||||||||||||| |||||
Sbjct 808 AT-A-CTG-AGGATGGAAATACAGATC-CT-AATGACCATTACTGTTGGATGCGGCCTGA 862
Query 756 GGATATTCATTATAAAAGGACTGT-ATCT-CAATGTTACAGTAGCTGCTCTGATCTTGCT 813
|||||| | ||||||||| |||| | || | ||| | || | || || ||||| |||
Sbjct 863 GGATATGGACTATAAAAGGCCTGTGA-CTACG-TGTAATGGTGGATGTTCGGATCTCGCT 920
Query 814 GCAGAGATGGCAGCTGCTCTGGCTTCTGCATCCATTGTATTCAAGGACAACAGATTA-TA 872
|||||||||||||||||||||||||| || || |||||||||||||| |||| | | ||
Sbjct 921 GCAGAGATGGCAGCTGCTCTGGCTTCAGCGTCTATTGTATTCAAGGATAACA-AGGAATA 979
Query 873 TTCGAAAAATCTTGTTCATGGTGCTAAGACGCTTTAT-AGGTTTGCAACTACTTCT-AG- 929
||| ||||| ||||||||||||||||||||| ||||| || |||| || ||| | ||
Sbjct 980 TTCTAAAAAGCTTGTTCATGGTGCTAAGACGGTTTATCAG-TTTGGAAGGACT-CGGAGA 1037
Query 930 GAATAGATACAGT-CAAA-A-TG-GTAAAGAGTCTAGCAAATTTTATAACTCTAGCATGT 985
| ||||| ||| || | || | || |||||||| |||||||| || |||||||
Sbjct 1038 GGG-AGATATAGTGCAGGCACTGCGGAA----TCTAGCAAGTTTTATAATTCAAGCATGT 1092
Query 986 -TTGAGGATGAGCT-ATTATGGGGTGGTGCTTGGCTGTATTATGCTACTGGAAATGTAAC 1043
||| ||||||| | ||| ||||||||||||||| |||| |||||||| |||||||||||
Sbjct 1093 ATTG-GGATGAGTTCATT-TGGGGTGGTGCTTGGTTGTACTATGCTACAGGAAATGTAAC 1150
Query 1044 TTATCTAGAA-CGAGTTACC-AGTCACCAC-ATGGCTGAGAAAGCTGGTGCCTTC-GGGA 1099
||||| || | | | ||| | | |||| ||||| || | |||||||||||| |||
Sbjct 1151 CTATCTC-AATCTAATCACCCAA-C-CCACTATGGCCAAGCATGCTGGTGCCTTCTGGGG 1207
Query 1100 ATAGTCCTTATTATGGCGTATTTAGCTGGGACAACAAGCTTCCAGGGGCTCAGTTGCTGT 1159
| ||||||| ||||| |||||||||||||||||||||||| | || |||||| ||||||
Sbjct 1208 -TGGTCCTTACTATGGTGTATTTAGCTGGGACAACAAGCTTGCTGGTGCTCAGCTGCTGT 1266
Query 1160 TAA-CACGGATGAGGCTGTTTCTGAGCCCTGGATATCCATATGAAGACATGT-TAAGCGA 1217
| | | ||| ||||| |||||||||| |||||||||||||||||||| || | |||| ||
Sbjct 1267 TGAGC-CGGTTGAGGTTGTTTCTGAGTCCTGGATATCCATATGAAGAAAT-TCTAAG-GA 1323
Query 1218 ATTTC-ATAACCAAAC-AGGCAGAGTTATGTGCTCTTACTTGCCT-TATTACAAGAAATT 1274
||| | || || || || || ||| |||||||| ||||||||| | || ||| |||||
Sbjct 1324 CCTTCCACAATCAGACTAG-CATAGTCATGTGCTCATACTTGCCTGTTTT-CAACAAATT 1381
Query 1275 TAACAGAACCAATGGAGGTTTGATTCAGTTGAACCATGGAGCTCCACAGCCTCTTCAATA 1334
||| |||||||| |||||||| || ||||||| |||||||| || |||||||| || ||
Sbjct 1382 TAATAGAACCAACGGAGGTTTAATAGAGTTGAATCATGGAGCCCCTCAGCCTCTGCAGTA 1441
Query 1335 TGT-TGCAAATGCGGCTTTCTTAGCGGCACTATTCAGTGATTATCTAGAGGCTGCTGATA 1393
| | || ||||| |||||| ||||| |||||| |||||||||||| || ||||||||||
Sbjct 1442 T-TCTGTGAATGCAGCTTTCCTAGCGACACTATACAGTGATTATCTGGATGCTGCTGATA 1500
Query 1394 CTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAAT-TCCTACGCAACTTTTCA 1452
|||| |||||||||||||| ||||| |||||| | ||| | | | ||||| ||||| |
Sbjct 1501 CTCCTGGATGGTACTGTGGACCTAATTTCTATTCAACT-AGTGTGCTACGTGACTTTGCT 1559
Query 1453 AGATCGCAGATTGATTATATACTTGGTAAAAACCCTCGGAAGATGAGTTATGTTGTGGGT 1512
||||| |||||||||||| |||| ||||||||||||||||| ||||||||||| || |||
Sbjct 1560 AGATCCCAGATTGATTATGTACTCGGTAAAAACCCTCGGAAAATGAGTTATGTCGTTGGT 1619
Query 1513 TATGGG-CAACGGTACCCGAAACAAGTGCATCACAGAGGAGCTTCAATTCCAAAGAACAT 1571
| ||| ||| ||||| ||||| |||||||||||||||||||| || || |||||||
Sbjct 1620 TTTGGCACAAAA-TACCCAAAACATGTGCATCACAGAGGAGCTTCGATACCCAAGAACAA 1678
Query 1572 -G--AAAGA-AACCTGCACAGGAGGATTTAAATGGAAAAAGAGCAA-AAAGAATAACCCA 1626
| ||| | ||| |||| |||||||| ||||||| | | ||||| ||| | ||||||
Sbjct 1679 AGTCAAATATAAC-TGCAAAGGAGGATGGAAATGGAGAGACAGCAAGAAACCA-AACCCA 1736
Query 1627 AACGCTATT-AATGGAGCAATGGTTGCTGGACCAGACAAGCATGACGGATTCCACGACAT 1685
||| | ||| || ||||| ||||||||||| || ||||||| ||||| |||| || |
Sbjct 1737 AACACGATTGAA-GGAGCCATGGTTGCTGGTCCTGACAAGCGCGACGGGTTCCGTGATGT 1795
Query 1686 ACGAACAAATTACAACTATACAGAGCCGACTCTAGCGGGAAATGCTGGTCTAGTCGCCGC 1745
|| | || |||||||| || || |||||||| || || ||||||||||||||||| ||
Sbjct 1796 CCGTATGAACTACAACTACACTGAACCGACTCTTGCAGGCAATGCTGGTCTAGTCGCAGC 1855
Query 1746 TCTGGTGGCTTTATCAGGG-GAA--A-AAGCGGTTGGTG-GTATTGACAAAAACACTATG 1800
||| ||||| || || ||| ||| | |||| ||| | || ||||||||||||||
Sbjct 1856 TCTCGTGGCATTGTC-GGGTGAAGCAGAAGCCACCGGTAAG-ATAGACAAAAACACTATT 1913
Query 1801 TTCTCTGCCGTACCTCCATTGGTTA--TGGCTACACCGCCGCCTCCAGCACCTTGGACAC 1858
||||| || || ||||||||| || | || ||||||| || |||||||| |||| ||
Sbjct 1914 TTCTCAGCTGTTCCTCCATTG-TTCCCTA-CTCCACCGCCTCCACCAGCACCATGGAAAC 1971
Query 1859 CTTGA 1863
|||||
Sbjct 1972 CTTGA 1976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5