BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G24265.1

Length=607
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492427 jgi|Araly1|492427|fgenesh2_kg.7__1860__AT4G24265.1         617    2e-176


> Ahg492427 jgi|Araly1|492427|fgenesh2_kg.7__1860__AT4G24265.1
Length=535

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 498/569 (88%), Gaps = 44/569 (8%)
 Strand=Plus/Plus

Query  1    GCAATGAAGAAGCTCACGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCA  60
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GCAATGAAGAAGCTCAAGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCA  60

Query  61   TCTCAGCCTCACCATTGCTCTTGTGAGTACTCTTCCAC-G--GCAGTAGCGGTGTTGGTT  117
            |||||||||||||||||||||| ||||||||||||| | |  |||| |||||||||||||
Sbjct  61   TCTCAGCCTCACCATTGCTCTTATGAGTACTCTTCCGCGGCAGCAGCAGCGGTGTTGGTT  120

Query  118  GAGCCCACAGCGCCTCCTCTTCCGTAT-TGGTTCGATGAGA-CTCGGAGTCTTTGTCCCC  175
            ||||||||||||||||||||||| | | ||||||||||||| | | |||||||||||  |
Sbjct  121  GAGCCCACAGCGCCTCCTCTTCC-TTTATGGTTCGATGAGAGC-CAGAGTCTTTGTCAGC  178

Query  176  CAGAGACATCATCATTTCCTTGGACTACTCATCACTTACCTCACCAACAAGAAGAAACCA  235
            ||||||||||| |||||||||||      ||| || | ||||||||||||| ||||||||
Sbjct  179  CAGAGACATCAGCATTTCCTTGG------CAT-AC-T-CCTCACCAACAAGTAGAAACCA  229

Query  236  TCGTTGAAGCAACCCCG---TTGTTGTCTCAAGTGTCTGATCTTCGCATCTACCAGTCTT  292
            |||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||
Sbjct  230  TCGTTGAAGCAACCCCGTTATTGTTGTCTCAAGTGTCCGATCTTCGCATCTACCAGTCTT  289

Query  293  ATCAACAGTACATGGTGCCGAATCCAACTAGTAACGTCCACTTTGTAGAACCAGCTACAG  352
            |||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||| |
Sbjct  290  ATCAACAGTACATGGTGCCGAATCCAACTAGTGACGTCCCCATTGTGGAACCAGCTACGG  349

Query  353  CAAAGAGATCAGTGGGAATATTCGGTTGTGTCATCGAGTTAAGTTCGAGTCTAGTTCGTT  412
            | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  350  CTAAGAGATCAGTGGGAATATTCGGTTGTGTTATCGAGTTAAGTTCGAGTCTAGTTCGTT  409

Query  413  GTTTCATACCGTAATTTGAGCAGTTTTATGGAAACCAATTTGCGAGAATAATTCAACATC  472
            ||||||||||||     ||    ||||  |    |      |  ||||||||||||||||
Sbjct  410  GTTTCATACCGT-----GA----TTTT--G----C------G--AGAATAATTCAACATC  446

Query  473  TTTTAACATGTTACGTGTATCATCTTTGCATCTTCTCAATTACATAAGCATCGAGTTAAG  532
            ||| | |||||| | ||||||||||||||||||||||||| |||| | |||| ||||| |
Sbjct  447  TTTGA-CATGTTCCATGTATCATCTTTGCATCTTCTCAATGACATCATCATCAAGTTATG  505

Query  533  GTCATAATCTTTTTAGAAATGTAAAATAA  561
            |||||||| ||| ||||||||||||||||
Sbjct  506  GTCATAAT-TTTCTAGAAATGTAAAATAA  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22187537694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5