BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24265.1 Length=607 Score E Sequences producing significant alignments: (Bits) Value Ahg492427 jgi|Araly1|492427|fgenesh2_kg.7__1860__AT4G24265.1 617 2e-176 > Ahg492427 jgi|Araly1|492427|fgenesh2_kg.7__1860__AT4G24265.1 Length=535 Score = 617 bits (334), Expect = 2e-176 Identities = 498/569 (88%), Gaps = 44/569 (8%) Strand=Plus/Plus Query 1 GCAATGAAGAAGCTCACGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCA 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GCAATGAAGAAGCTCAAGTTCTGGTCAAGAAAGAAGAGGAAACGTAAGCAAGCTTGCCCA 60 Query 61 TCTCAGCCTCACCATTGCTCTTGTGAGTACTCTTCCAC-G--GCAGTAGCGGTGTTGGTT 117 |||||||||||||||||||||| ||||||||||||| | | |||| ||||||||||||| Sbjct 61 TCTCAGCCTCACCATTGCTCTTATGAGTACTCTTCCGCGGCAGCAGCAGCGGTGTTGGTT 120 Query 118 GAGCCCACAGCGCCTCCTCTTCCGTAT-TGGTTCGATGAGA-CTCGGAGTCTTTGTCCCC 175 ||||||||||||||||||||||| | | ||||||||||||| | | ||||||||||| | Sbjct 121 GAGCCCACAGCGCCTCCTCTTCC-TTTATGGTTCGATGAGAGC-CAGAGTCTTTGTCAGC 178 Query 176 CAGAGACATCATCATTTCCTTGGACTACTCATCACTTACCTCACCAACAAGAAGAAACCA 235 ||||||||||| ||||||||||| ||| || | ||||||||||||| |||||||| Sbjct 179 CAGAGACATCAGCATTTCCTTGG------CAT-AC-T-CCTCACCAACAAGTAGAAACCA 229 Query 236 TCGTTGAAGCAACCCCG---TTGTTGTCTCAAGTGTCTGATCTTCGCATCTACCAGTCTT 292 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 230 TCGTTGAAGCAACCCCGTTATTGTTGTCTCAAGTGTCCGATCTTCGCATCTACCAGTCTT 289 Query 293 ATCAACAGTACATGGTGCCGAATCCAACTAGTAACGTCCACTTTGTAGAACCAGCTACAG 352 |||||||||||||||||||||||||||||||| |||||| | |||| ||||||||||| | Sbjct 290 ATCAACAGTACATGGTGCCGAATCCAACTAGTGACGTCCCCATTGTGGAACCAGCTACGG 349 Query 353 CAAAGAGATCAGTGGGAATATTCGGTTGTGTCATCGAGTTAAGTTCGAGTCTAGTTCGTT 412 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 350 CTAAGAGATCAGTGGGAATATTCGGTTGTGTTATCGAGTTAAGTTCGAGTCTAGTTCGTT 409 Query 413 GTTTCATACCGTAATTTGAGCAGTTTTATGGAAACCAATTTGCGAGAATAATTCAACATC 472 |||||||||||| || |||| | | | |||||||||||||||| Sbjct 410 GTTTCATACCGT-----GA----TTTT--G----C------G--AGAATAATTCAACATC 446 Query 473 TTTTAACATGTTACGTGTATCATCTTTGCATCTTCTCAATTACATAAGCATCGAGTTAAG 532 ||| | |||||| | ||||||||||||||||||||||||| |||| | |||| ||||| | Sbjct 447 TTTGA-CATGTTCCATGTATCATCTTTGCATCTTCTCAATGACATCATCATCAAGTTATG 505 Query 533 GTCATAATCTTTTTAGAAATGTAAAATAA 561 |||||||| ||| |||||||||||||||| Sbjct 506 GTCATAAT-TTTCTAGAAATGTAAAATAA 533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22187537694 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5