BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24275.1 Length=544 Score E Sequences producing significant alignments: (Bits) Value Ahg492424 jgi|Araly1|492424|fgenesh2_kg.7__1857__AT4G24275.1 813 0.0 > Ahg492424 jgi|Araly1|492424|fgenesh2_kg.7__1857__AT4G24275.1 Length=522 Score = 813 bits (440), Expect = 0.0 Identities = 484/505 (96%), Gaps = 4/505 (1%) Strand=Plus/Plus Query 35 gaagaagaagaaagagagaaCAAATCATGAGTGGCTATTCCAAGATGGATTCAACAGACC 94 ||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 21 GAAGAAGAAGAAATAGAGAACAAAACATGAGTGGCTATTCCAAAATGGATTCAACAGACC 80 Query 95 AGAAACTTGAGCCGGACCACCCGGTGGTCGATCCTCAGATTCAGAAGCCCGATCTTGAAC 154 |||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 81 AGAAGCTTGAGCCGGACCACCC--T-GTCGATCCTCAGACTCAGAAGCCCGATCTTGAAC 137 Query 155 CTGCTGAAATGAAACCGAAGCTGAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG 214 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 138 CTGTTGAAATGAAACCGAAGCTAAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG 197 Query 215 TTCCTTCACCAATAAAGATGTCTATGAGAAGATCTTCGTCTGTCTCTGAACGCTACTGTA 274 ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 198 TTCCTTCACCAGTGAAGATGTCTATGAGAAGATCCTCGTCTGTCTCTGAACGCTACTGTA 257 Query 275 GAATCTATGACCAGAGCTCTGCCACGACTTGGCCGCTTCCTTTCCatgaaggagatgaag 334 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 258 GAATCTATGACCAGAGCTCTGCCACGACGTGGCCTCTTCCTTTCCATGAAGGAGATGAAG 317 Query 335 acgaagatgatgatgataaagagaaggtgcacaagaagaagaagaGCAACAACTTCAAGA 394 ||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 318 ACGTCGAAGATGATGATAAAGAGAAGGTGCACAAGAAAAAGAAGAGCAACAACTTCAAGA 377 Query 395 AAAAAGCATTCGTAAAGGCTTGTAAGCGtttttttGGGATCTCGTGAAACCAGTTTTTGT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 AAAAAGCATTCGTAAAGGCTTGTAAGCGTTTTTTTGGGATCTCGTGAAACCAGTTTTTGT 437 Query 455 TT-CCTCTACCTCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC 513 || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 438 TTTCCTCTACATCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC 497 Query 514 ATCTTTTTCATGAAACGTTTAATAC 538 ||||||||||||||||||||||||| Sbjct 498 ATCTTTTTCATGAAACGTTTAATAC 522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19840906280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5