BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G24275.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492424 jgi|Araly1|492424|fgenesh2_kg.7__1857__AT4G24275.1         813    0.0  


> Ahg492424 jgi|Araly1|492424|fgenesh2_kg.7__1857__AT4G24275.1
Length=522

 Score =  813 bits (440),  Expect = 0.0
 Identities = 484/505 (96%), Gaps = 4/505 (1%)
 Strand=Plus/Plus

Query  35   gaagaagaagaaagagagaaCAAATCATGAGTGGCTATTCCAAGATGGATTCAACAGACC  94
            ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct  21   GAAGAAGAAGAAATAGAGAACAAAACATGAGTGGCTATTCCAAAATGGATTCAACAGACC  80

Query  95   AGAAACTTGAGCCGGACCACCCGGTGGTCGATCCTCAGATTCAGAAGCCCGATCTTGAAC  154
            |||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||||||
Sbjct  81   AGAAGCTTGAGCCGGACCACCC--T-GTCGATCCTCAGACTCAGAAGCCCGATCTTGAAC  137

Query  155  CTGCTGAAATGAAACCGAAGCTGAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG  214
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  138  CTGTTGAAATGAAACCGAAGCTAAGCAGGAACAGGTCAGTGTCTGCATCAGCACAAGCGG  197

Query  215  TTCCTTCACCAATAAAGATGTCTATGAGAAGATCTTCGTCTGTCTCTGAACGCTACTGTA  274
            ||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  198  TTCCTTCACCAGTGAAGATGTCTATGAGAAGATCCTCGTCTGTCTCTGAACGCTACTGTA  257

Query  275  GAATCTATGACCAGAGCTCTGCCACGACTTGGCCGCTTCCTTTCCatgaaggagatgaag  334
            |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  258  GAATCTATGACCAGAGCTCTGCCACGACGTGGCCTCTTCCTTTCCATGAAGGAGATGAAG  317

Query  335  acgaagatgatgatgataaagagaaggtgcacaagaagaagaagaGCAACAACTTCAAGA  394
            |||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  318  ACGTCGAAGATGATGATAAAGAGAAGGTGCACAAGAAAAAGAAGAGCAACAACTTCAAGA  377

Query  395  AAAAAGCATTCGTAAAGGCTTGTAAGCGtttttttGGGATCTCGTGAAACCAGTTTTTGT  454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  AAAAAGCATTCGTAAAGGCTTGTAAGCGTTTTTTTGGGATCTCGTGAAACCAGTTTTTGT  437

Query  455  TT-CCTCTACCTCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC  513
            || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  TTTCCTCTACATCCATATCTATCATATAATAGATCTCATTGTTATTTTCGATTAGAGTCC  497

Query  514  ATCTTTTTCATGAAACGTTTAATAC  538
            |||||||||||||||||||||||||
Sbjct  498  ATCTTTTTCATGAAACGTTTAATAC  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5