BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24290.2
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492421 jgi|Araly1|492421|fgenesh2_kg.7__1854__AT4G24290.2 3164 0.0
> Ahg492421 jgi|Araly1|492421|fgenesh2_kg.7__1854__AT4G24290.2
Length=2071
Score = 3164 bits (1713), Expect = 0.0
Identities = 1947/2057 (95%), Gaps = 27/2057 (1%)
Strand=Plus/Plus
Query 30 TTTTGATTAACAAAACTAATTTA--------CCATTGAGGGTTTTCTTCTTCCTTCTTCT 81
||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 TTTTGATTAACAAAACTAATTTACTGCTCCTCCATTGAGGGTTTTCTTCTT-CTTCTTCT 59
Query 82 TCATCCT-CTTTGCTGCTATGATTGAGCTCCATGGATCTGCAATCATAGTTC-TTCGATT 139
||| ||| ||||||||||| |||| ||||||||| ||||||||| |||| | || ||||
Sbjct 60 TCAACCTCCTTTGCTGCTAAGATTCAGCTCCATGTCTCTGCAATCCTAGTCCGTT-GATT 118
Query 140 TAGGATTCGTTTAGATCGCGGTTTTTGAGCTCGGTTG--G-------TGAAGACATATGC 190
|||||||||||||||||| ||||||||||||| |||| | |||||||||||||
Sbjct 119 TAGGATTCGTTTAGATCGTGGTTTTTGAGCTCTGTTGAAGATTCTCTTGAAGACATATGC 178
Query 191 TTGAAAAC--AGAAGTCTTGTACTGAAGCATGGCTCTTCGGCTACCAGCTTCTAAAGCAG 248
|| ||||| | ||||||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 179 TTCAAAACGTATAAGTCTTGTACTGAATCATGGCACTACGGCTACCAGCTTCTAAAGCAG 238
Query 249 CTGAAGTTGCGATTGGATCTATTGGCTGTGGTTATGATCTAGCTATTGATTTACGGTTGA 308
||||||||||||||||||| |||||||| ||||||||||||||||||||| || ||||||
Sbjct 239 CTGAAGTTGCGATTGGATCGATTGGCTGCGGTTATGATCTAGCTATTGATGTAAGGTTGA 298
Query 309 AGTATTGCAAAGGAGGTTCCAAAGATTCTAGATTACTTGACATTAAAGAAGGTGATGATA 368
||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
Sbjct 299 AGTATTGCAAAGGAGGTTCTAAAGATTCTAGATTACTTGATATCAAAGAAGGTGATGACA 358
Query 369 ATTGTGAGATTGTTTTACCTGGTGGAATCTCCATTCCTAATGTTTCCAAGTCTATCAAAT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 ATTGTGAGATTGTTTTACCTGGTGGAATCTCCATTCCTAATGTTTCCAAGTCTATTAAAT 418
Query 429 GCGATAAAGGGGAGCGTATGCGGTTTAGGTCCGATATTCTTCCTTTCCAACAGATGGCAG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCGATAAAGGGGAGCGTATGCGGTTTAGGTCCGATATTCTTCCTTTCCAACAGATGGCAG 478
Query 489 AGCAGTTCAACCAGGAACTATCTTTGGCTGGGAAAATCCCGTCAGGTCTCTTCAATGCCA 548
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 479 AGCAGTTCAACCAGGAACTATCTTTGGCTGGTAAAATCCCGTCAGGTCTCTTCAATGCGA 538
Query 549 TGTTTGAATTCTCGAGCTGTTGGCAGAAAGACGCAGCCTACACCAAAAACCTTGCTTTTG 608
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 539 TGTTTGAATTCTCGAGCTGTTGGCAGAAAGATGCAGCCTATACCAAAAACCTTGCTTTTG 598
Query 609 ATGGGGTTTTCATCTCATTATACTCGGTGGCTTTGGACAAATCTCAAGTGTTACTCCGTG 668
||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 599 ATGGGGTATTCATCTCATTATACACGGTTGCTTTGGACAAATCTCAAGTGTTACTCCGTG 658
Query 669 AGCATGTTAAGCAGGCTGTTCCATCAACATGGGACCCTGCTGCATTGGCAAGGTTTATAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCATGTTAAGCAGGCTGTTCCATCAACATGGGACCCTGCTGCATTGGCAAGGTTTATAG 718
Query 729 ATATTTATGGGACGCATATAATTGTTAGTGTTAAGATGGGAGGAAAAGATGTGATTTATG 788
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 ATATTTATGGGACGCATATAATTGTTAGTGTGAAGATGGGAGGAAAAGATGTGATTTATG 778
Query 789 CAAAACAACAACACTCCTCAAAACTTCAGCCTGAGGATCTGCAGAAAAGGTTAAAAGAGG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAAACAACAACACTCCTCAAAACTTCAGCCTGAGGATCTGCAGAAAAGGTTAAAAGAGG 838
Query 849 TGGCAGATAAGAGGTTCGTGGAAGCTAGCGTAGTGCATAATACGGGTTCAGAAAGAGTAC 908
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TGGCAGATAAGAGGTTCATTGAAGCTAGCGTAGTGCATAATACGGCTTCAGAAAGAGTAC 898
Query 909 AAGCAAGTAGTAAGGTGGAAACAAAGGAGCAACGCCTGAGATTTGCAGATACCAGTTCTT 968
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 899 ATGCAAGTAGTAAGGTGGAAACAAAGGAGCAACGCCTGAGATTTGCAGATACCAGTTCGT 958
Query 969 TGGGCTCTTATGCAAATAAGGAGGACTAT-GTCTTCATGTGCAAGAGGCGAGGTGGAAAC 1027
|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 959 TGGGCTCTTATGCAAATAAGGAGGAC-ATTGTCTTCATGTGCAAAAGGCGAGGTGGAAAT 1017
Query 1028 GATAACAGAAATCTAATGCATAATGAATGGCTGCAAACAGTTCAGATGGAGCCTGATGTT 1087
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATAATAGAAATCTAATGCATAATGAATGGCTGCAAACAGTTCAGATGGAGCCTGATGTT 1077
Query 1088 ATCTCCATGTCTTTTATTCCAATTACGTCTTTGCTTAATGGAGTTCCAGGAAGTGGATTC 1147
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1078 ATCTCAATGTCCTTTATTCCAATTACGTCTTTGCTCAATGGAGTTCCAGGAAGTGGATTC 1137
Query 1148 TTAAGCCATGCCATAAATCTGTATCTAAGATATAAGCCACCAATTGAAGAGCTGCATCAG 1207
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 TTAAGCCATGCCATAAATCTGTATCTAAGATATAAGCCACCGATTGAAGAGCTGCATCAG 1197
Query 1208 TTTCTCGAGTTTCAGCTACCAAGGCAGTGGGCACCCGTTTTTAGTGAACTTCCTCTTGGT 1267
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 TTTCTAGAGTTTCAGCTACCAAGGCAGTGGGCACCCGTGTTTAGTGAACTTCCTCTTGGT 1257
Query 1268 CCGCAACGAAAGCAACAAAGTTGTGCGTCTCTGCAATTCAGTTTCTTTGGACCTAAGCTA 1327
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1258 CCGCAACGGAAGCAACAAAGTTGTGCATCTCTGCAATTCAGTTTCTTCGGACCTAAGCTC 1317
Query 1328 TACGTGAATACCACTCCGGTTGATGTTGGTAAGAGGCCAATCACTGGCATGCGGCTCTAC 1387
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 TATGTGAATACGACTCCGGTTGATGTTGGTAAGAGGCCAATCACTGGGATGCGGCTCTAC 1377
Query 1388 CTAGAGGGTAGAAGAAGCAACCGTTTGGCAATTCATTTGCAACACCTTTCCTCTCTTCCC 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTAGAGGGTAGAAGAAGCAACCGTTTGGCAATTCATTTGCAACACCTTTCCTCTCTTCCC 1437
Query 1448 AAGATATATCAGCTCGAAGACGATCTAAATAGAAGTATCCGGCAAGAGTCTCATGACCGT 1507
||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||| |||
Sbjct 1438 AAGATATATCAGCTCGAAGACGATCTAAATAAAAGTGTCCGGCAAGAGGCGCATGATCGT 1497
Query 1508 CGATACTATGAGAAAGTAAACTGGAAGAACTACTCTCACGTCTGCACAGAGCCTGTCGAA 1567
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1498 CGATACTATGAGAAAGTAAACTGGAAGAACTACTCTCACGTCTGCACAGAACCCGTCGAA 1557
Query 1568 TCAGATGATGATCTTTCTGTAGTAACAGGTGCGCAGCTTCATGTAGAGAGCCACGGATTC 1627
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1558 TCAGATGATGATCTTTCTGTAGTAACAGGTGCGCAGCTTCATGTAGAAAGCCATGGATTC 1617
Query 1628 AAGAACGTGCTCTTCTTGCGCCTTTGTTTCTCTAGAGTTGTGGGAGCAACACTGGTAAAG 1687
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1618 AAGAACGTGCTCTTCTTGCGCCTTTGTTTCTCTAGAGTTGTGGGAGCAACACTTGTAAAG 1677
Query 1688 AATTCTGAATGGGATGAAGCGGTAGGCTTTGCTCCAAAATCAGGACTCATCTCAACGCTA 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AATTCTGAATGGGATGAAGCGGTAGGCTTTGCTCCAAAATCAGGACTCATCTCAACGCTA 1737
Query 1748 ATAAGCCATCACTTCACTGCAGCACAAAAACCACCACCACGACCTGCAGACGTGAATATA 1807
|||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 1738 ATAAGCCATCACTTTACTGCAGCACAGAAACCACCACCAAGACCTGCAGATGTGAATATA 1797
Query 1808 AATTCGGCTATATATCCTGGTGGACCACCAGTACCCACGCAAGCTCCAAAACTTTTGAAA 1867
|| |||||||| || ||||| || |||||||||||||| |||||||| ||||||||||||
Sbjct 1798 AACTCGGCTATCTACCCTGGCGGGCCACCAGTACCCACACAAGCTCCCAAACTTTTGAAA 1857
Query 1868 TTTGTGGATACAAGTGAGATGACAAGAGGGCCGCAAGAATCACCCGGGTATTGGGTTGTA 1927
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1858 TTTGTGGATACAAGTGAGATGACGAGAGGACCGCAAGAATCACCCGGGTATTGGGTTGTA 1917
Query 1928 TCGGGTGCAAGATTATTGGTGGAGAAAGGCAAAATCTCATTGAAGGTGAAGTATTCTCTA 1987
|| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1918 TCAGGTGCAAGATTACTGGTGGAGAAAGGCAAAATATCATTGAAGGTGAAGTATTCTCTA 1977
Query 1988 TTTACTCCAATATTGGGAGATGAAGTGA-TCGAGGAAGCCTATGAAGGTTAAGAGAAAAT 2046
|||||||||||||||||||||||||||| | |||||| |||||||| |||||| | ||||
Sbjct 1978 TTTACTCCAATATTGGGAGATGAAGTGAGT-GAGGAACCCTATGAATGTTAAGTGGAAAT 2036
Query 2047 GGTGGTGGTGTGGCTCA 2063
|||||| ||||||||||
Sbjct 2037 GGTGGTTGTGTGGCTCA 2053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84750795125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5