BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24310.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492419 jgi|Araly1|492419|fgenesh2_kg.7__1852__AT4G24310.1 992 0.0
> Ahg492419 jgi|Araly1|492419|fgenesh2_kg.7__1852__AT4G24310.1
Length=697
Score = 992 bits (537), Expect = 0.0
Identities = 619/659 (94%), Gaps = 4/659 (1%)
Strand=Plus/Plus
Query 8 ATGTCTTCACCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAG 67
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCATCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAG 60
Query 68 TCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCAGTCATGTCACAGACGCTAACC 127
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 TCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCCGCCATGTCACAGACGCTAACC 120
Query 128 TCAGCTGCAAACCTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTC 187
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGCTGCAAACTTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTC 180
Query 188 ATACCCGTCTTTACATCCAATGGTTCATGCGATTACCCGACCCAG-GTTTTAACCA-TAG 245
||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | |
Sbjct 181 ATACCCGTCTTTACATCCAATGGTTCATGCGATTATCCGACCC-GTGTTTTAACCGCTGG 239
Query 246 TGCTCCTCACGCTTCTCTCCATCTCCTGCTTCCTTAGCTCCTTCACTGACAGCGTCAAGG 305
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 240 -GCTCCTAACGCTTCTCTCCATCTCCTGCTTCCTCAGCTCCTTCACAGACAGCGTCAAGG 298
Query 306 CTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGGTTTTCGACT 365
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 CTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGATTTTCGACT 358
Query 366 ACCCTGACCCTGACGGTTTGGGTTTACCCAATCTTAGTAAATACCGGATAAGAATTATTG 425
||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| |
Sbjct 359 ACCCTGACCCTGATGGTTTGGGTTTACCCGATCTTAGTAAATACCGCATAAGGATTATCG 418
Query 426 ACTGGATCCACGCCGTTTTGTCGGTTCTTGTGTTTGGTGCGGTGGCTCTGAGGGACAAGA 485
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 419 ACTGGATCCACGCCGTTTTGTCTGTTCTTGTGTTCGGTGCGGTGGCTCTGAGGGACAAGA 478
Query 486 ACGCCGTGAGTTGTTTTTATCCGGCGCCAGAGCAAGAAACCAAGAAGGTTTTGGACATTG 545
|||||||||| ||||||||||| || || |||||||||||||||||||||||||| ||||
Sbjct 479 ACGCCGTGAGCTGTTTTTATCCAGCTCCGGAGCAAGAAACCAAGAAGGTTTTGGATATTG 538
Query 546 TTCCAATGGGTGTTGGGGTTATCTGTGGCATGTTGTTCTTGGTTTTTCCGGCGAGAAGGC 605
|||| ||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||| |
Sbjct 539 TTCCGATGGGTGTTGGGGTTATTTGCGGCTTGTTGTTTTTGGTTTTCCCGGCCAGAAGAC 598
Query 606 ACGGTATTGGATATCCGGTCACCGGAGACGGGGGTCGTCGTTAGATTTGTTATTTATTT 664
||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 599 ACGGTATCGGATATCCGGTTACCGGAGACGGAGGCCGCCGTTAGATTTGTTATTTATTT 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5