BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24310.1 Length=783 Score E Sequences producing significant alignments: (Bits) Value Ahg492419 jgi|Araly1|492419|fgenesh2_kg.7__1852__AT4G24310.1 992 0.0 > Ahg492419 jgi|Araly1|492419|fgenesh2_kg.7__1852__AT4G24310.1 Length=697 Score = 992 bits (537), Expect = 0.0 Identities = 619/659 (94%), Gaps = 4/659 (1%) Strand=Plus/Plus Query 8 ATGTCTTCACCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAG 67 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTCATCATCTTCCCTAACGCAGAGAAACCCAACTAGTTCGCAAGAGCAATCGGAG 60 Query 68 TCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCAGTCATGTCACAGACGCTAACC 127 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 61 TCTGTTCCACAGCTAAGGAGGCAGACATCTCAACATGCCGCCATGTCACAGACGCTAACC 120 Query 128 TCAGCTGCAAACCTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTC 187 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAGCTGCAAACTTGGCAAATCTCCTTCCAACCGGAACGCTCTTAGCTTTCACGCTCCTC 180 Query 188 ATACCCGTCTTTACATCCAATGGTTCATGCGATTACCCGACCCAG-GTTTTAACCA-TAG 245 ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| | | Sbjct 181 ATACCCGTCTTTACATCCAATGGTTCATGCGATTATCCGACCC-GTGTTTTAACCGCTGG 239 Query 246 TGCTCCTCACGCTTCTCTCCATCTCCTGCTTCCTTAGCTCCTTCACTGACAGCGTCAAGG 305 |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 240 -GCTCCTAACGCTTCTCTCCATCTCCTGCTTCCTCAGCTCCTTCACAGACAGCGTCAAGG 298 Query 306 CTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGGTTTTCGACT 365 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 299 CTGAAGACGGTAACGTTTATTACGGTTTTGCTACTCGTAAGGGCATGTGGATTTTCGACT 358 Query 366 ACCCTGACCCTGACGGTTTGGGTTTACCCAATCTTAGTAAATACCGGATAAGAATTATTG 425 ||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||| | Sbjct 359 ACCCTGACCCTGATGGTTTGGGTTTACCCGATCTTAGTAAATACCGCATAAGGATTATCG 418 Query 426 ACTGGATCCACGCCGTTTTGTCGGTTCTTGTGTTTGGTGCGGTGGCTCTGAGGGACAAGA 485 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 419 ACTGGATCCACGCCGTTTTGTCTGTTCTTGTGTTCGGTGCGGTGGCTCTGAGGGACAAGA 478 Query 486 ACGCCGTGAGTTGTTTTTATCCGGCGCCAGAGCAAGAAACCAAGAAGGTTTTGGACATTG 545 |||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||| Sbjct 479 ACGCCGTGAGCTGTTTTTATCCAGCTCCGGAGCAAGAAACCAAGAAGGTTTTGGATATTG 538 Query 546 TTCCAATGGGTGTTGGGGTTATCTGTGGCATGTTGTTCTTGGTTTTTCCGGCGAGAAGGC 605 |||| ||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||| | Sbjct 539 TTCCGATGGGTGTTGGGGTTATTTGCGGCTTGTTGTTTTTGGTTTTCCCGGCCAGAAGAC 598 Query 606 ACGGTATTGGATATCCGGTCACCGGAGACGGGGGTCGTCGTTAGATTTGTTATTTATTT 664 ||||||| ||||||||||| ||||||||||| || || ||||||||||||||||||||| Sbjct 599 ACGGTATCGGATATCCGGTTACCGGAGACGGAGGCCGCCGTTAGATTTGTTATTTATTT 657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28897171086 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5