BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24320.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492418 jgi|Araly1|492418|fgenesh2_kg.7__1851__AT4G24320.1 1358 0.0
> Ahg492418 jgi|Araly1|492418|fgenesh2_kg.7__1851__AT4G24320.1
Length=1110
Score = 1358 bits (735), Expect = 0.0
Identities = 829/875 (95%), Gaps = 4/875 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCTGCAACAACAAAGCTAGCGAGAGCTCTGCAACAAAGACGCACCTTCGTAAAC 60
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGCTGCAACCACAAAGCTGGGGAGAGCTCTGCAACAAAGACGCACCTTCGTAAAC 60
Query 61 GCCAGAGTCAAATGGGTCAGTGACCATTACCTCGACGAAGCTGTTCAACGAGAGAAAAAC 120
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 61 GCCAGAGTCAAATGGGTCAGTGACTACTACCTCGACGAAGCTGTTCAACGAGAGAAAAAC 120
Query 121 CTAAAGCAAGTTATCTCTCTCAAGGATCGAATCGTATCATCTCCGTCGAAATCACTCCCT 180
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 121 CTCAAGCAAGTTATCTCTCTCAAGGATCGAATGGTATCTTCTCCGTCGAAATCTCTCCCT 180
Query 181 CTCTCTTCTCTTTCACTTCTCAAACCTCTCGTCAATCTTCACATAACCGCCGCCGCGTTT 240
|||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 181 CTCTCTTCCCTTTCACTCCTCAAGCCTCTCGTCAATCTCCACATAACCGCCGCCGCGTTT 240
Query 241 TTCCAGAAATACCCTTCTGTCTTCACCACTTTTCAGCCTTCTCCTTCTCATCCTCTCCAT 300
|||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 241 TTCCAGAAATACCCTTCTGTCTTCACCACTTTTCAGCCCTCTCGTTCTCTTCCTCTCCAC 300
Query 301 GTTCGTCTCACTCCCCAAGCTCTCA-CTCTCCACAAAGAAGAAGAGACGATTCATC-TCT 358
||||||||||||||||||||||| | | ||||||||||||||||||||||| || | |||
Sbjct 301 GTTCGTCTCACTCCCCAAGCTCT-AGCCCTCCACAAAGAAGAAGAGACGATCCA-CATCT 358
Query 359 CGCCGCCTCAACGCAACGTCACTGTTCAACGGTTGACTAAATTCTTGATGCTAACGGGAG 418
|||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 359 CGCCGCCTCACCGCAACGTCACCGTTAAACGGTTGACCAAATTCTTGATGCTAACGGGAG 418
Query 419 CTGGAAGTCTTCCTCTCTATGTCCTCGATCGTTTCAGGTTCGATTTGGGTCTCCCTCGCG 478
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 419 CTGGAAGTCTTCCTCTCTATATCGTCGATCGTTTCAGGTTCGATTTGGGTCTCCCTCACG 478
Query 479 ATTACATTACTTCGTTGATCGGCGATTACCCGGAATACTTTGAAGTAACTGAGATCAAAG 538
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 479 ATTACATTACTTCGCTGATCGGAGATTACCCGGATTACTTTGAAGTAACTGAGATCAAAG 538
Query 539 ATCGGTTAACGGGTGAAAAGACGCTTGCTTTGACGATATCTTCGCGGCGGAACAACCTTC 598
|| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 539 ATAGGTTAACGGGTGAAAAGACGCTTGCTTTGACAATTTCTTCGCGGCGGAACAACCTCC 598
Query 599 CTGTGTCGGAAATGGAGAGAAGAGAAGCCACCATTGATGGGTCTCGTGTGAAAAAAGGGT 658
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 599 CTGTGTCGGAAATGGAGAGAAGAGAAGCCACCATTGATGGGTTTCGTGTGAAAAAAGGGT 658
Query 659 TGCGCATAAGGTATTCGATGAATTTCCCCAAAGGGTACGAATTGCATAAAAGGGTGAAGA 718
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 659 TGCGCATAAGGTATTCGATGAATTTCCCCAAAGGGTACGAGTTGGATAAAAGGGTGAAGA 718
Query 719 ATTGGGTGGAGCAATGGCAAAATCTCCCATACATTTCGCCTTATGAAAATGCTTTTCACT 778
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 719 ATTGGGTGGAGCAATGGCAAAATCTCCCATACATTTCGCCTTACGAAAATGCCTTTCACT 778
Query 779 TGGGGTCGTACAGTGATCAGGCTGAGAAGTGGGCTGTCGCAGTACTTCATGAGCTTTTGT 838
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 TGGGGTCGTACAGTGATCAGGCTGAGAAGTGGGCGGTCGCAGTACTTCATGAGCTTTTGT 838
Query 839 TCCTTTTAGTATCTAAGAAGACTGAGACAGACAAT 873
||| |||||||| |||||||||||||||||||||
Sbjct 839 GCCTCTTAGTATCGAAGAAGACTGAGACAGACAAT 873
Score = 353 bits (191), Expect = 1e-96
Identities = 226/242 (93%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 915 CAAGAAGGCTTTGGTGCACCACCCGGGTATATTTTACATGTCGCACAAGATTCGGACCCA 974
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 CAATAATGCTTTGGTGCACCACCCGGGTATATTTTACATGTCGCACAAGATTCGGACCCA 929
Query 975 GACTGTTGTTCTAAGGGAAGCTTACCACAAAGTTTTCTTGCTGGAGAAGCATCCATTGAT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GACTGTTGTTCTAAGGGAAGCTTACCACAAAGTTTTCTTGCTGGAGAAGCATCCATTGAT 989
Query 1035 GGGGATCAGACATCAGTACATTTATCTTATGAGCAAATCAGGGAGAGGGAAGAAACGAGA 1094
|||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 990 GGGGATGAGGCATCAGTACATTTATCTTATGAGCAAATCGGGGAGAGGAAAGAAACGCGA 1049
Query 1095 CTATGTTCATGGAGTTGAGAGAAG----CAACCGAAAAAAG-AGAGTAATCAAAGCTTGT 1149
|| |||||||||| |||||||||| ||||| ||||||| |||| |||||||||||||
Sbjct 1050 CTCTGTTCATGGAATTGAGAGAAGGAAGCAACC-AAAAAAGGAGAGCAATCAAAGCTTGT 1108
Query 1150 GA 1151
||
Sbjct 1109 GA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5