BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24330.1
Length=1863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945666 jgi|Araly1|945666|scaffold_701895.1 2377 0.0
> Ahg945666 jgi|Araly1|945666|scaffold_701895.1
Length=1500
Score = 2377 bits (1287), Expect = 0.0
Identities = 1440/1512 (95%), Gaps = 18/1512 (1%)
Strand=Plus/Plus
Query 77 TCTTCTTCTCTCCGGATCCAAA-AATGAATCGTCTCTTTTCTCTCTTCTCCATAGCTCTG 135
|||||||||||||||||||||| |||||||| || | |||||||||||||||| ||||||
Sbjct 1 TCTTCTTCTCTCCGGATCCAAACAATGAATC-TC-C-TTTCTCTCTTCTCCATCGCTCTG 57
Query 136 ATCGCTTTCCTCTGCCTCCACCATCATGTTCTCGCTTCTTCCTCTTCCGACTTCGAAGGT 195
||||||||||||||||| || |||| ||| |||||||| | ||||||| ||||||||||
Sbjct 58 ATCGCTTTCCTCTGCCTTCATCATCGTGTCCTCGCTTC-T--TCTTCCGCCTTCGAAGGT 114
Query 196 TTCGATGCTGAAGACGACGATGTTTCAGAAGATTCCACTGAGCTTCACCACTCTCTCCGT 255
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 115 TTCGATGCTGAAGACGACGATGTTTTAGACGATTCCACTGAGCTTCACCACTCTCTCCGT 174
Query 256 CCTCCTCTTCTGACTCAGTCTGAGTCAACGGTTCTGGATCTGGACCCATCTCCCGATTCT 315
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 CCTCCTCTTCTGACTCAGTCTGAGTCAACGGTTCTGGATCTGGACCCATCTTCCGATTCC 234
Query 316 GA-T-T-CTACTCCTGCATCTAAATCTGATCCTCCCACTCAGACCGTGAAGCCTTCGTCC 372
|| | | ||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 235 GATTCTACTACTCCGGCATCTAAATCGGATCCTCCCACTCAGACCGTGAAGCCTTC-T-- 291
Query 373 TCCATCTCCTTCGATTACTGGGATGAAGATGAGTTCGAAGGATTGCCGGAGGACGAGAAA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 292 TCCATCTCCTTCGATTACTGGGATGAAGATGAGTTCGAAGGATTGCCGGAGGATGAGAAA 351
Query 433 TCTACGGAGTCTCCGGTTTTTTCCGATGACGCCTCCT-CT-CCTGCCGATCCACAGACGC 490
|| ||||||||||||||| |||||||||| |||| || || || ||||||||||||||||
Sbjct 352 TCGACGGAGTCTCCGGTTATTTCCGATGATGCCT-CTCCTGCC-GCCGATCCACAGACGC 409
Query 491 CGGATCTTGAGTCTGCTTCAGAAACTCCAGATACTGACATTCCGAAGAAGATGCAATCGT 550
| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 410 CAGATCTTGAGTCTGCTTCAGAAACTGCAGATACTGACATTCCGAAGAAGAAGCAATCGT 469
Query 551 ACACTGTGGAGATCGTTTGCGTCTCTATATTGATTGGTTACGCTATCAATTACTTCACTG 610
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 470 ACACGGTGGAGATCGTTTGCGTCTCTATATTGATTGGTTACGCAATCAATTACTTCACTG 529
Query 611 GTAAACGTGAAAATGAGAACCTCGCTTTGGCTTGGGCTTCCAAATTTGGTCTTAAAGATA 670
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GTAAACGTGAGAATGAAAACCTCGCTTTGGCTTGGGCTTCCAAATTTGGTCTTAAAGATA 589
Query 671 CGATTTTTGAGAAGAACTTCAGTTTGCTTGGAGTTGGTGAAGGAGAAGACTCTCCTTTGT 730
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCATTTTTGAGAAAAACTTCAGTTTGCTTGGAGTTGGTGAAGGAGAAGACTCTCCTTTGT 649
Query 731 TGCTGAAAGAAGCGACGAATGTGTTTAAGTTCTATGCCAGTGGGCGTAGGTATTGCCATG 790
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 650 TGCTCAAAGAAGCGACGAATGTGTTTAAGTTCTATGCGAGTGGGCGTAGGTATTGCCATG 709
Query 791 GGCTTTTGGCGACTTTGGAGCTTAAGAGTAGACACGATCTGATCTCAAGGCTATTCAACT 850
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 GGCTGTTGGCGACCTTGGAGCTTAAGAGCAGACACGATCTGATCTCAAGGCTATTCAACT 769
Query 851 CTGTCGTGCCTTGTAAAGATGAGATTAGTTTTGAGGTGTATATGAATGATGAAGCCATGG 910
|||| |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||
Sbjct 770 CTGTTGTGCCTTGTAAAGATGAGATCAGTTTCGAGGTTTACATGAACGATGAAGCCATGG 829
Query 911 ATCACATTGTGTTTGCTATGGCGAGGAAGAAGGCGGCTAAAACGATGCACAAGGAGCTGA 970
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ATCACATTGTGTTTGCGATGGCGAGGAAGAAGGCGGCTAAAACGATGCACAAGGAGCTGA 889
Query 971 GGGATCTGCAGAGATTTGGAGGGATGGTTCCCAGTCCTGGCGGGAGGAAGTGGGTAACGG 1030
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 890 GGGATCTGCAGAGATTTGGAGGGATGGTGCCCAGCCCTGGCGGGAGGAAGTGGGTAACGG 949
Query 1031 AGGAGTTAGCTGTGGTCTCTGAGTCTAAGGAGGTAGCTGGAGATATGATCACCGATGTTG 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AGGAGTTAGCTGTGGTCTCTGAGTCTAAGGAGGTAGCTGGAGATATGATCACCGATGTTG 1009
Query 1091 TACTTGATCAGGTTTTTGGTGACAAGTCTTTTGAAAAGTTTGGGAAGTATTTCATCTCAA 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TACTTGATCAGGTTTTTGGTGACAAGTCTTTTGAAAAGTTTGGGAAGTATTTCATCTCAA 1069
Query 1151 TGCATTTCTCGGATCAACATCCTGGCAAACACAGGAAGATGCTGCTTTTCAAGTTTGCCT 1210
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TGCATTTTTCGGATCAACATCCTGGCAAACACAGGAAGATGCTGCTTTTCAAGTTTGCCC 1129
Query 1211 TACCTGATATTAAACACATGGATGATATGGTTCGGTTGATAGCGCTAATTCCGTATTACA 1270
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1130 TACCTGATGCTAAACACATGGATGATATGGTGCGGTTGATAGCGCTAATTCCATATTATA 1189
Query 1271 TTGACTTAATTGGGCGCTACAAGCTCAGCTCTCAGGCAAGGAACAAAACTGACGGTGCTA 1330
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1190 TTGACTTAATTGGGCGCTACAAGCTCAGCTCCCAGGCAAGGAACAAAACTGACGGTGCTA 1249
Query 1331 GGCAAAAGGCGGCTCAGGAAGCGTACAAGGAACTTGAGAATGTGAGACAAGAGGCATTGC 1390
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1250 GGCAAAAGGCAGCTCAGGAAGCGTACAAGGAACTTGAGAATGTAAGACAAGAGGCATTGC 1309
Query 1391 AGAGAAAGAAAGCCGAAAAGAAGAAAATATTGGAGGAGGCACAGGCAAAGCTTAGCTCCG 1450
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1310 AGAGAAAGAAAGCTGAAAAGAAGAAAATATTGGAGGAGGCACAGGCAAAGCTTAGCGCCG 1369
Query 1451 AGGCTCTAAGGAAGAAAGAAGCAAAAGAACGTGCACGCCAGATGAAAAAGTCAATGCCGA 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 AGGCTCTAAGGAAGAAAGAAGCAAAAGAACGTGCACGCCAGATGAAAAAGTCAATGCCGA 1429
Query 1511 AAGTTAAGATGAGTCGTGGTCACTAGAATCAAGCATAAGGGACACACTGTCATGTCGTCC 1570
|||||||||||||||| ||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1430 AAGTTAAGATGAGTCGAGGTCACTAGAATCAAGCATAAGG-ACACAGTCTCATGTCGTCC 1488
Query 1571 ATTGGAATAGCT 1582
||||||||||||
Sbjct 1489 ATTGGAATAGCT 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69971780065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5