BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24340.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492412 jgi|Araly1|492412|fgenesh2_kg.7__1845__AT4G24350.1 1312 0.0
Ahg354336 jgi|Araly1|354336|fgenesh1_pg.C_scaffold_7001509 935 0.0
> Ahg492412 jgi|Araly1|492412|fgenesh2_kg.7__1845__AT4G24350.1
Length=1206
Score = 1312 bits (710), Expect = 0.0
Identities = 964/1084 (89%), Gaps = 28/1084 (3%)
Strand=Plus/Plus
Query 13 CCAACCAA-TATATCAGATGGCTTCCATGGATCACAATCATTT-TCTTTTTCCTCTCCTC 70
|||||||| | |||||||||||||| || | ||||||| ||| |||| ||||||| |||
Sbjct 81 CCAACCAACCA-ATCAGATGGCTTCCCTGTACCACAATC-TTTATCTTCTTCCTCTGCTC 138
Query 71 TTCATCATCATCATCTCTTCCTTGCACGTTTTGCGTGCTTCGA-CCACACCTTCACACTC 129
||| ||||||||||||||||||| |||||||||| || ||| | ||||||| | ||
Sbjct 139 TTCTTCATCATCATCTCTTCCTTCCACGTTTTGCCTGTTTC-ACCCACACC-T-----TC 191
Query 130 ACACAAACTAAAATCCGCCACTACCATTAGAAAAATCAACCGT-AGAGGACCTTACATTG 188
|||||||||||||||||| | ||||||| ||||| |||||| | |||||||| ||||| |
Sbjct 192 ACACAAACTAAAATCCGCTATTACCATTCGAAAACTCAACC-TCAGAGGACCGTACATCG 250
Query 189 GCCTTGTGACGGTCTTTGAGACCGAAGAAGATGCTTTTCTCGGCAGTGTTGATTTCAGAC 248
|||| ||||||||| |||||||||||||| ||||||||||| ||||||| || |||||||
Sbjct 251 GCCTCGTGACGGTCATTGAGACCGAAGAAAATGCTTTTCTCCGCAGTGTCGAATTCAGAC 310
Query 249 TCGATCCTACGCATCCTTTCCTCGATCTCTCTGGAAGACGTTTTCGTATAGGGAAGATTC 308
||| ||||| ||||| ||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct 311 CCGACCCTACTCATCCCTTCTTGGATCTCTCTGGAAGACGTTTTCGAATAGGGAAGGTTC 370
Query 309 ATGGAAAGAAGGTTGTGTATGTCAGATGTGGGATAGGAATGGTGAACGCAGCAGCAGCAA 368
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 371 ATGGAAAGAAGGTTGTGTATGTCAGATGTGGGAGAGGAATGGTGAACGGAGCAGCAGCAA 430
Query 369 CACAACAAATGATAGATGTGTTCAGTGTGAAAGGGATTGTGCATTTTGGGATTGCTGGAA 428
||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 431 CACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGTGCATTTTGGGATTGCAGGAA 490
Query 429 ATATAAACAACTCGATGTCCATAGGAGATGTGAGCATCCCTAAGCAAATCACGAATGCTG 488
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 ATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCCTAAGCAAATCACGAATGCTG 550
Query 489 GCTTGTGGGATTGGCTGAATCCAGGCAAAGCAAAAGGAAATGAGGATGTAGCGTACTTAG 548
|||| ||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||
Sbjct 551 GCTTATGGGATTGGCTGAATCCAGAAAAAGCAAAGGGAGGTGAGGATTTAGCGTACTTAG 610
Query 549 ATGTCGGGAACTATAATGTTCCACAAGGA-A----A-CAATAAGTTAGGAACTATTGGAT 602
| ||||||||||||||||||||| ||||| | | |||| ||||||| | ||||||||
Sbjct 611 AGGTCGGGAACTATAATGTTCCAAAAGGAGATGGCAACAATGAGTTAGGGAGTATTGGAT 670
Query 603 ACAGTTACGAGGAATTATATTCAGTCAGTGGTCACATCAAT-TCACCAAAGAAAGTGTTT 661
||||||||||| || |||||||||||| ||||| ||||||| | ||| |||| ||||||
Sbjct 671 ACAGTTACGAGCAACTATATTCAGTCACTGGTCGCATCAATAT-ACCTCAGAATGTGTTT 729
Query 662 TGGATTAATACAACTCAAGAGTGGCTTCATCTTGCAGCTGATCTTGAGAAGATGGAGCTA 721
||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 730 TGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGAGCTAGAGAAGATGGAGCTG 789
Query 722 TTGCAGTGTGTGAATGCAAGTCTGTGTCTTCCAAATAAACCCAAAGTAGTAGTTGGATTA 781
| ||||||||||||||||||| ||||||||||||| ||||| ||| | || |||||| |
Sbjct 790 TCGCAGTGTGTGAATGCAAGTTTGTGTCTTCCAAAGAAACCGAAATTGGTTGTTGGACTG 849
Query 782 AAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTATAGAAATTTCTTATACGAT 841
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 850 AAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTACAGAAATTTCTTATACGAT 909
Query 842 ACTTTTGGAGTTTCCTCCTCAGACATGGAGAGTTCTGCTGTGGCCATGACTTGCGTGTCA 901
|||||||| |||||||||||||| |||||||||||||| || |||||||| |||| |||
Sbjct 910 ACTTTTGGCGTTTCCTCCTCAGATATGGAGAGTTCTGCAGTAGCCATGACGTGCGCATCA 969
Query 902 AATGGGTATCCCCTAATTGTGATAAGAGGATTATCAGATTTAGCAGGAGTAGGAG-A--T 958
||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 970 AATGGTTATCCCGTAATTGTGATAAGAGGATTATCAGATTTAGCTGGAGTAGGAGGAGAT 1029
Query 959 AACACTGTTCGA-AAGTTTGGATCTTTGGCTGCCACTAACACTGCCAAAGCTGTTTTAGA 1017
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1030 AACACTGTTC-ATAAGTTTGGATCTTTGGCTGCCACTAACACTGCTAAAGCTGTTTTGGA 1088
Query 1018 GTTCATTAAAAAGCTCCCACCGTCATAATTCCTACGTGTAACCTATC-ATTATGGATGTT 1076
||||||||| ||||| ||||||| ||||||||| ||||||||||| || ||| |||||
Sbjct 1089 GTTCATTAAGAAGCTTGCACCGTCCTAATTCCTAAGTGTAACCTATTTATCATGAATGTT 1148
Query 1077 TGAA 1080
||||
Sbjct 1149 TGAA 1152
> Ahg354336 jgi|Araly1|354336|fgenesh1_pg.C_scaffold_7001509
Length=735
Score = 935 bits (506), Expect = 0.0
Identities = 619/672 (92%), Gaps = 14/672 (2%)
Strand=Plus/Plus
Query 40 GGATCACAATCATTTTCTTTTTCCTCTCCTCTTCATCATCATCATCTCTTCCTTGCACGT 99
||| || |||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 32 GGACCAAAATCATTTTCTTCTTCCTCTCCTCTTCATCATTATCATCTCTTCCCTGCACGT 91
Query 100 TTTGCGTGCTTCGACCACACCTTCACACTCACACAAACTAAAATCCGCCACTACCATTAG 159
||||| |||||| | | |||| | | |||||| |||| ||||| |||| |||||| ||
Sbjct 92 TTTGCTTGCTTCCA-C-CACC--C-C-TTCACAC-AACT-AAATCTGCCATTACCATCAG 143
Query 160 AAAAATCAACCGTAGAGGACCTTACATTGGCCTTGTGACGGTCTTTGAGACCGAAGAAGA 219
|||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||| |
Sbjct 144 AAAACTCAACCGTAGAGGACCTTACATTGGTCTCGTGACAGTCTTTGAGACCGAAGAAAA 203
Query 220 TGCTTTTCTCGGCAGTGTTGATTTCAGACTCGATCCTACGCATCCTTTCCTCGATCTCTC 279
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 204 TGCTTTTCTCGGCAGTGTTGATTTCAGACCCGATCCTATGCATCCTTTCCTCGATCTCTC 263
Query 280 TGGAAGACGTTTTCG---T---ATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAG 333
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 264 TGGAAGACGTTTTCGTTTTCGGATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAG 323
Query 334 ATGTGGGATAGGAATGGTGAACGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAG 393
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 324 ATGTGGGATAGGAATGGTGAATGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAA 383
Query 394 TGTGAAAGGGATTGTGCATTTTGGGATTGCTGGAAATATAAACAACTCGATGTCCATAGG 453
||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 384 CGTGAAAGGGATTGTGCATTTTGGAATTTCTGGAAATATAAACAACTCAATGTCCATAGG 443
Query 454 AGATGTGAGCATCCCTAAGCAAATCACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGG 513
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 444 AGATGTGAGCATTCCTAAGCAAATCACGAATGCTGGCTTATGGGATTGGCTGAATCCAGA 503
Query 514 CAAAGCAAAAGGAAATGAGGATGTAGCGTACTTAGATGTCGGGAACTATAATGTTCCACA 573
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 504 AAAAGCAAAAGGAAGTGAGGATGTAGCCTACTTAGATGTCGGGAACTATAATGTTCCACA 563
Query 574 AGGAAACAATAAGTTAGGAACTATTGGATACAGTTACGAGGAATTATATTCAGTCAGTGG 633
||| || ||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 564 AGGCAAGAATGAGTTAGGGACTATTGGATATAGTTACGAGGAATTATATTCAGTCAATGG 623
Query 634 TCACATCAATTCACCAAAGAAAGTGTTTTGGATTAATACAACTCAAGAGTGGCTTCATCT 693
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 624 TCACATCAATTCACCACAGAAAGTGTTTTGGATCAATACAACTCAAGAGTGGCTTCATCT 683
Query 694 TGCAGCTGATCT 705
|||||||||||
Sbjct 684 CGCAGCTGATCT 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5