BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24350.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492412 jgi|Araly1|492412|fgenesh2_kg.7__1845__AT4G24350.1 1694 0.0
Ahg354336 jgi|Araly1|354336|fgenesh1_pg.C_scaffold_7001509 773 0.0
> Ahg492412 jgi|Araly1|492412|fgenesh2_kg.7__1845__AT4G24350.1
Length=1206
Score = 1694 bits (917), Expect = 0.0
Identities = 1123/1218 (92%), Gaps = 31/1218 (3%)
Strand=Plus/Plus
Query 10 ACGAGAAGCACGTGGAAAGAAGAAAC-T-ATCA--AGTTGGACTTGGATGatatatatat 65
||||||| |||||||||||||||||| | || | |||| || ||||||| ||||
Sbjct 4 ACGAGAATCACGTGGAAAGAAGAAACTTGAT-AGTAGTTTGAATTGGATG------ATAT 56
Query 66 atatGCAGCTGTGGATTTGAATCGTAAACCAACCAACCAATCAGAT-G-------G-ACC 116
|||||||||||||||||| |||| | |||||||||||||||||| | | |||
Sbjct 57 ATATGCAGCTGTGGATTTAAATC-T---CCAACCAACCAATCAGATGGCTTCCCTGTACC 112
Query 117 ACACTCTTTCTCTTCTTCCAT-TTCTCTTCATCATAATCATTTCTTCCTTCCATGTTTTG 175
||| ||||| ||||||||| | | |||||| |||| ||||| ||||||||||| ||||||
Sbjct 113 ACAATCTTTATCTTCTTCC-TCTGCTCTTCTTCATCATCATCTCTTCCTTCCACGTTTTG 171
Query 176 CCTGTTTCACCCACACCTTCACACAAACTAAAATCCGCCACTACCA-TCAGAAAACTCAA 234
|||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||
Sbjct 172 CCTGTTTCACCCACACCTTCACACAAACTAAAATCCGCTATTACCATTC-GAAAACTCAA 230
Query 235 CCGCGGAGGACCTTACATCGGTCTCGTGACGGTCATTGCGACCGAAGAAAATGCTTTTCT 294
|| | ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 231 CCTCAGAGGACCGTACATCGGCCTCGTGACGGTCATTGAGACCGAAGAAAATGCTTTTCT 290
Query 295 CCGCAGTGTCGATTTCAGACCTGACCCTACTCATCCCTTCTTGGATCTCTCTGGGAGACG 354
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 291 CCGCAGTGTCGAATTCAGACCCGACCCTACTCATCCCTTCTTGGATCTCTCTGGAAGACG 350
Query 355 TTTTCGAATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTTAGATGTGGGAGAGGAAT 414
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 351 TTTTCGAATAGGGAAGGTTCATGGAAAGAAGGTTGTGTATGTCAGATGTGGGAGAGGAAT 410
Query 415 GGTGAATGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGT 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GGTGAACGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGT 470
Query 475 GCATTTTGGGATTGCTGGAAATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCC 534
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCATTTTGGGATTGCAGGAAATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCC 530
Query 535 TAAGCAAATTACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGACAAAGTAAAGGGAGT 594
||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 531 TAAGCAAATCACGAATGCTGGCTTATGGGATTGGCTGAATCCAGAAAAAGCAAAGGGAGG 590
Query 595 TGAGGATATAGCGTACTTAGATGTCGGAAACTATAATGTTCCAAAAGGAGATGGCGACAA 654
||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 591 TGAGGATTTAGCGTACTTAGAGGTCGGGAACTATAATGTTCCAAAAGGAGATGGCAACAA 650
Query 655 TGAGTTAGGGAGTATTGGATATAATTACGAGCAACTATATTCAGTCACTGGTCACATCAA 714
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||
Sbjct 651 TGAGTTAGGGAGTATTGGATACAGTTACGAGCAACTATATTCAGTCACTGGTCGCATCAA 710
Query 715 TGCACCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGA 774
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TATACCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGA 770
Query 775 TCTAGAGAAGATGGAGCTATCGCAGTGTGTAAATGCAAGTTTGTGTCTTCCAAAGAAACC 834
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 771 GCTAGAGAAGATGGAGCTGTCGCAGTGTGTGAATGCAAGTTTGTGTCTTCCAAAGAAACC 830
Query 835 AAAATTGGTAGTTGGATTGAAAGCAGCCACTGCTTACATATTTGTGGATAATGCAGCCTA 894
|||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 831 GAAATTGGTTGTTGGACTGAAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTA 890
Query 895 TAGAAATTTCTTATACGATACTTTTGGAGTCTCCTCCTCTGATATGGAGAGTTCTGCAGT 954
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 891 CAGAAATTTCTTATACGATACTTTTGGCGTTTCCTCCTCAGATATGGAGAGTTCTGCAGT 950
Query 955 AGCCATGACATGCGCATCAAATGGGTATCC-GATAATTGTGATAAGGGGTTTATCAGATT 1013
||||||||| |||||||||||||| ||||| | ||||||||||||| || ||||||||||
Sbjct 951 AGCCATGACGTGCGCATCAAATGGTTATCCCG-TAATTGTGATAAGAGGATTATCAGATT 1009
Query 1014 TAGCTGGAGAAGGAGGAGATAACACTGTTCATAAGTTTGGATCTTTGGCTGCCACTAACA 1073
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TAGCTGGAGTAGGAGGAGATAACACTGTTCATAAGTTTGGATCTTTGGCTGCCACTAACA 1069
Query 1074 CTGCCAAAGCTGTTTTAGAGTTCATTAGGAAGCTCCCACCGTACTAATTCCTCTAGTGTA 1133
|||| ||||||||||| |||||||||| |||||| |||||| ||||||||| ||||||
Sbjct 1070 CTGCTAAAGCTGTTTTGGAGTTCATTAAGAAGCTTGCACCGTCCTAATTCCTA-AGTGTA 1128
Query 1134 ACCTATTTATCATGAATGTTTGAATCTAGTTCTCTAGTTCATATCAACGAACCCGTGACA 1193
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1129 ACCTATTTATCATGAATGTTTGAACCTAGTTCTCTAGTTCATATCAACGAACCCGTGGCA 1188
Query 1194 ACAAATGATTTGGATTGT 1211
||||||||||||||||||
Sbjct 1189 ACAAATGATTTGGATTGT 1206
> Ahg354336 jgi|Araly1|354336|fgenesh1_pg.C_scaffold_7001509
Length=735
Score = 773 bits (418), Expect = 0.0
Identities = 597/680 (88%), Gaps = 26/680 (4%)
Strand=Plus/Plus
Query 112 GGACCACACTC-TTTCTCTTCTTCCAT-TTCTCTTCATCATAATCATTTCTTCCTTCCAT 169
|||||| | || ||| ||||||||| | | ||||||||||| ||||| |||||| | ||
Sbjct 32 GGACCAAAATCATTT-TCTTCTTCC-TCTCCTCTTCATCATTATCATCTCTTCCCTGCAC 89
Query 170 GTTTTGCCTG-TTTCACCCACACCTTCACACAAACTAAAATCCGCCACTACCATCAGAAA 228
||||||| || || || |||| ||||||||| |||| ||||| |||| ||||||||||||
Sbjct 90 GTTTTGCTTGCTTCCA-CCACCCCTTCACAC-AACT-AAATCTGCCATTACCATCAGAAA 146
Query 229 ACTCAACCGCGGAGGACCTTACATCGGTCTCGTGACGGTCATTGCGACCGAAGAAAATGC 288
||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||||
Sbjct 147 ACTCAACCGTAGAGGACCTTACATTGGTCTCGTGACAGTCTTTGAGACCGAAGAAAATGC 206
Query 289 TTTTCTCCGCAGTGTCGATTTCAGACCTGACCCTACT-CATCCCTTCTTGGATCTCTCTG 347
||||||| ||||||| ||||||||||| || |||| | ||||| ||| | ||||||||||
Sbjct 207 TTTTCTCGGCAGTGTTGATTTCAGACCCGATCCTA-TGCATCCTTTCCTCGATCTCTCTG 265
Query 348 G--GA-G---ACGTTTTCGAATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTTAGAT 401
| || | |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 266 GAAGACGTTTTCGTTTTCGGATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAGAT 325
Query 402 GTGGGAGAGGAATGGTGAATGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATG 461
|||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 326 GTGGGATAGGAATGGTGAATGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAACG 385
Query 462 TGAAAGGGATAGTGCATTTTGGGATTGCTGGAAATATGAACAACTCAATGTCCATAGGAG 521
|||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 386 TGAAAGGGATTGTGCATTTTGGAATTTCTGGAAATATAAACAACTCAATGTCCATAGGAG 445
Query 522 ATGTGAGCATCCCTAAGCAAATTACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGACA 581
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 446 ATGTGAGCATTCCTAAGCAAATCACGAATGCTGGCTTATGGGATTGGCTGAATCCAGAAA 505
Query 582 AAGTAAAGGGA-GTTGAGGATATAGCGTACTTAGATGTCGGAAACTATAATGTTCCAAAA 640
||| ||| ||| || |||||| |||| |||||||||||||| ||||||||||||||| ||
Sbjct 506 AAGCAAAAGGAAGT-GAGGATGTAGCCTACTTAGATGTCGGGAACTATAATGTTCCACAA 564
Query 641 GG-AGATGGCGACAATGAGTTAGGGAGTATTGGATATAATTACGAGCAACTATATTCAGT 699
|| | | | | | ||||||||||| ||||||||||| ||||||| || ||||||||||
Sbjct 565 GGCA-A-G---A-A-TGAGTTAGGGACTATTGGATATAGTTACGAGGAATTATATTCAGT 617
Query 700 CACTGGTCACATCAATGCACCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCT 759
|| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 618 CAATGGTCACATCAATTCACCACAGAAAGTGTTTTGGATCAATACAACTCAAGAGTGGCT 677
Query 760 TCATCTTGCAGCTGATCTAG 779
|||||| |||||||||||||
Sbjct 678 TCATCTCGCAGCTGATCTAG 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5